Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.73■□□□□ 0.59
Prpf40aQ9R1C7 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Mir5122-201ENSMUST00000175004 89 ntBASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Prpf40aQ9R1C7 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Prpf40aQ9R1C7 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Prpf40aQ9R1C7 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Gm21814-202ENSMUST00000203277 873 ntBASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Prpf40aQ9R1C7 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Prpf40aQ9R1C7 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Gm38027-201ENSMUST00000192315 235 ntBASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Prpf40aQ9R1C7 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms