Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Gm16499-203ENSMUST00000204633 2177 ntBASIC16.06■□□□□ 0.16
Clrn1Q8K445 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Gm17661-201ENSMUST00000170317 270 ntBASIC16.06■□□□□ 0.16
Clrn1Q8K445 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Gm9731-201ENSMUST00000209480 747 ntBASIC16.06■□□□□ 0.16
Clrn1Q8K445 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Gm5417-201ENSMUST00000079706 384 ntBASIC16.06■□□□□ 0.16
Clrn1Q8K445 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Gm43294-201ENSMUST00000202850 2490 ntBASIC16.05■□□□□ 0.16
Clrn1Q8K445 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.05■□□□□ 0.16
Clrn1Q8K445 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.05■□□□□ 0.16
Clrn1Q8K445 Gm21814-202ENSMUST00000203277 873 ntBASIC16.05■□□□□ 0.16
Clrn1Q8K445 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC16.05■□□□□ 0.16
Clrn1Q8K445 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Clrn1Q8K445 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC16.04■□□□□ 0.16
Clrn1Q8K445 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Clrn1Q8K445 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Clrn1Q8K445 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Gm37055-201ENSMUST00000191866 133 ntBASIC16.03■□□□□ 0.16
Clrn1Q8K445 AC135963.1-201ENSMUST00000211640 717 ntBASIC16.03■□□□□ 0.16
Clrn1Q8K445 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Clrn1Q8K445 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
Clrn1Q8K445 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Clrn1Q8K445 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Clrn1Q8K445 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Clrn1Q8K445 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms