Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trub1Q8C0D0 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trub1Q8C0D0 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trub1Q8C0D0 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trub1Q8C0D0 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trub1Q8C0D0 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trub1Q8C0D0 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Trub1Q8C0D0 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trub1Q8C0D0 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.52■□□□□ 0.39
Trub1Q8C0D0 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trub1Q8C0D0 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trub1Q8C0D0 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trub1Q8C0D0 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Gm13216-201ENSMUST00000117145 591 ntBASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trub1Q8C0D0 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms