Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC24.04■■□□□ 1.44
Usp47Q8BY87 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Usp47Q8BY87 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Usp47Q8BY87 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC24.04■■□□□ 1.44
Usp47Q8BY87 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Gm11336-201ENSMUST00000118168 334 ntBASIC24.03■■□□□ 1.44
Usp47Q8BY87 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Gm7284-201ENSMUST00000131667 944 ntBASIC24.03■■□□□ 1.44
Usp47Q8BY87 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Gm21362-201ENSMUST00000194272 928 ntBASIC24.03■■□□□ 1.44
Usp47Q8BY87 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Gm7367-201ENSMUST00000057611 492 ntBASIC24.03■■□□□ 1.44
Usp47Q8BY87 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp47Q8BY87 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC24.02■■□□□ 1.44
Usp47Q8BY87 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Usp47Q8BY87 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Usp47Q8BY87 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
Usp47Q8BY87 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Usp47Q8BY87 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Usp47Q8BY87 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
Usp47Q8BY87 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Usp47Q8BY87 Gm10819-201ENSMUST00000099988 561 ntBASIC24.02■■□□□ 1.44
Usp47Q8BY87 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Usp47Q8BY87 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Usp47Q8BY87 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC24.01■■□□□ 1.43
Usp47Q8BY87 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Gm45203-201ENSMUST00000206384 1831 ntBASIC24.01■■□□□ 1.43
Usp47Q8BY87 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Gm10459-201ENSMUST00000202708 1155 ntBASIC24.01■■□□□ 1.43
Usp47Q8BY87 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
Usp47Q8BY87 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp47Q8BY87 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC24■■□□□ 1.43
Usp47Q8BY87 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC24■■□□□ 1.43
Usp47Q8BY87 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Usp47Q8BY87 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Usp47Q8BY87 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC24■■□□□ 1.43
Usp47Q8BY87 AC122351.1-201ENSMUST00000220467 126 ntBASIC24■■□□□ 1.43
Usp47Q8BY87 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Usp47Q8BY87 Gm6598-201ENSMUST00000202719 2615 ntBASIC24■■□□□ 1.43
Usp47Q8BY87 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Usp47Q8BY87 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Usp47Q8BY87 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp47Q8BY87 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC23.98■■□□□ 1.43
Usp47Q8BY87 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC23.98■■□□□ 1.43
Usp47Q8BY87 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp47Q8BY87 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC23.98■■□□□ 1.43
Usp47Q8BY87 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp47Q8BY87 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC23.97■■□□□ 1.43
Usp47Q8BY87 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Usp47Q8BY87 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Usp47Q8BY87 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Usp47Q8BY87 Gfra2-202ENSMUST00000227633 1480 ntBASIC23.96■■□□□ 1.43
Usp47Q8BY87 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms