Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 AC154855.1-201ENSMUST00000227353 1458 ntBASIC20.88■□□□□ 0.93
Trim27Q62158 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC20.88■□□□□ 0.93
Trim27Q62158 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.88■□□□□ 0.93
Trim27Q62158 Gm10252-201ENSMUST00000209541 832 ntBASIC20.88■□□□□ 0.93
Trim27Q62158 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
Trim27Q62158 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Trim27Q62158 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Trim27Q62158 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Trim27Q62158 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Trim27Q62158 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC20.87■□□□□ 0.93
Trim27Q62158 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trim27Q62158 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
Trim27Q62158 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Trim27Q62158 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
Trim27Q62158 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim27Q62158 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim27Q62158 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim27Q62158 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Trim27Q62158 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim27Q62158 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC20.86■□□□□ 0.93
Trim27Q62158 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim27Q62158 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim27Q62158 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim27Q62158 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim27Q62158 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim27Q62158 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC20.86■□□□□ 0.93
Trim27Q62158 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Trim27Q62158 Gm7370-201ENSMUST00000219471 767 ntBASIC20.86■□□□□ 0.93
Trim27Q62158 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Trim27Q62158 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC20.86■□□□□ 0.93
Trim27Q62158 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim27Q62158 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Trim27Q62158 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim27Q62158 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim27Q62158 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Trim27Q62158 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim27Q62158 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Trim27Q62158 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC20.85■□□□□ 0.93
Trim27Q62158 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim27Q62158 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim27Q62158 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim27Q62158 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Trim27Q62158 Gm26596-201ENSMUST00000180464 2655 ntBASIC20.84■□□□□ 0.93
Trim27Q62158 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim27Q62158 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Trim27Q62158 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim27Q62158 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim27Q62158 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.84■□□□□ 0.93
Trim27Q62158 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Trim27Q62158 AC107711.5-202ENSMUST00000226429 702 ntBASIC20.84■□□□□ 0.93
Trim27Q62158 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim27Q62158 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim27Q62158 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Trim27Q62158 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Trim27Q62158 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim27Q62158 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim27Q62158 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Trim27Q62158 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim27Q62158 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC20.84■□□□□ 0.93
Trim27Q62158 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim27Q62158 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim27Q62158 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim27Q62158 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim27Q62158 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim27Q62158 Gm13559-201ENSMUST00000120476 863 ntBASIC20.83■□□□□ 0.93
Trim27Q62158 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim27Q62158 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.83■□□□□ 0.93
Trim27Q62158 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim27Q62158 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim27Q62158 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.92
Trim27Q62158 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim27Q62158 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim27Q62158 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim27Q62158 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Trim27Q62158 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Trim27Q62158 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim27Q62158 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms