Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC16.44■□□□□ 0.22
Col27a1Q5QNQ9 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col27a1Q5QNQ9 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col27a1Q5QNQ9 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col27a1Q5QNQ9 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col27a1Q5QNQ9 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col27a1Q5QNQ9 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Mir3113-201ENSMUST00000175478 76 ntBASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col27a1Q5QNQ9 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Gm5186-201ENSMUST00000218781 920 ntBASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Col27a1Q5QNQ9 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Gm15920-201ENSMUST00000118998 402 ntBASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Gm14057-201ENSMUST00000120631 482 ntBASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Gm11780-201ENSMUST00000136880 516 ntBASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Gm7507-201ENSMUST00000183053 1008 ntBASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col27a1Q5QNQ9 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col27a1Q5QNQ9 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms