Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Limch1Q3UH68 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Limch1Q3UH68 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Limch1Q3UH68 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Limch1Q3UH68 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Limch1Q3UH68 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Limch1Q3UH68 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC20.02■□□□□ 0.79
Limch1Q3UH68 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Limch1Q3UH68 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Limch1Q3UH68 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
Limch1Q3UH68 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Limch1Q3UH68 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Limch1Q3UH68 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Gm6659-201ENSMUST00000174752 547 ntBASIC20■□□□□ 0.79
Limch1Q3UH68 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC20■□□□□ 0.79
Limch1Q3UH68 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC20■□□□□ 0.79
Limch1Q3UH68 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Limch1Q3UH68 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Limch1Q3UH68 Tfap2a-209ENSMUST00000225180 1828 ntBASIC19.99■□□□□ 0.79
Limch1Q3UH68 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Gm24841-201ENSMUST00000158676 357 ntBASIC19.99■□□□□ 0.79
Limch1Q3UH68 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Limch1Q3UH68 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.98■□□□□ 0.79
Limch1Q3UH68 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.98■□□□□ 0.79
Limch1Q3UH68 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Gm16401-202ENSMUST00000197463 2074 ntBASIC19.98■□□□□ 0.79
Limch1Q3UH68 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Limch1Q3UH68 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms