Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col8a1Q00780 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.47□□□□□ -0.09
Col8a1Q00780 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC14.47□□□□□ -0.09
Col8a1Q00780 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col8a1Q00780 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Col8a1Q00780 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.46□□□□□ -0.09
Col8a1Q00780 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Cxcl14-202ENSMUST00000224801 1467 ntBASIC14.46□□□□□ -0.09
Col8a1Q00780 Fam105a-203ENSMUST00000226170 3043 ntBASIC14.46□□□□□ -0.09
Col8a1Q00780 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC14.46□□□□□ -0.09
Col8a1Q00780 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC14.46□□□□□ -0.09
Col8a1Q00780 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC14.46□□□□□ -0.09
Col8a1Q00780 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col8a1Q00780 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col8a1Q00780 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col8a1Q00780 Gm6190-201ENSMUST00000220683 1374 ntBASIC14.46□□□□□ -0.1
Col8a1Q00780 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col8a1Q00780 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col8a1Q00780 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.45□□□□□ -0.1
Col8a1Q00780 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Col8a1Q00780 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Col8a1Q00780 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Col8a1Q00780 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col8a1Q00780 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Col8a1Q00780 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Col8a1Q00780 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC14.44□□□□□ -0.1
Col8a1Q00780 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC14.44□□□□□ -0.1
Col8a1Q00780 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC14.44□□□□□ -0.1
Col8a1Q00780 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Col8a1Q00780 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.44□□□□□ -0.1
Col8a1Q00780 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Col8a1Q00780 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC14.44□□□□□ -0.1
Col8a1Q00780 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.44□□□□□ -0.1
Col8a1Q00780 Gm9449-201ENSMUST00000207265 1011 ntBASIC14.44□□□□□ -0.1
Col8a1Q00780 AC138767.1-201ENSMUST00000222661 415 ntBASIC14.44□□□□□ -0.1
Col8a1Q00780 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC14.44□□□□□ -0.1
Col8a1Q00780 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Col8a1Q00780 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Col8a1Q00780 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Col8a1Q00780 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col8a1Q00780 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms