Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
HttP42859 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
HttP42859 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
HttP42859 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
HttP42859 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HttP42859 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.2■□□□□ 0.5
HttP42859 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HttP42859 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC18.2■□□□□ 0.5
HttP42859 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HttP42859 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HttP42859 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HttP42859 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HttP42859 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HttP42859 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HttP42859 Gm13616-201ENSMUST00000120600 222 ntBASIC18.19■□□□□ 0.5
HttP42859 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HttP42859 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HttP42859 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HttP42859 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC18.19■□□□□ 0.5
HttP42859 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC18.19■□□□□ 0.5
HttP42859 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.19■□□□□ 0.5
HttP42859 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
HttP42859 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC18.18■□□□□ 0.5
HttP42859 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC18.18■□□□□ 0.5
HttP42859 Gm37171-201ENSMUST00000192636 1185 ntBASIC18.18■□□□□ 0.5
HttP42859 Gm7856-201ENSMUST00000117514 1493 ntBASIC18.18■□□□□ 0.5
HttP42859 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC18.18■□□□□ 0.5
HttP42859 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HttP42859 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HttP42859 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC18.18■□□□□ 0.5
HttP42859 Ndufaf2-202ENSMUST00000223734 556 ntBASIC18.18■□□□□ 0.5
HttP42859 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HttP42859 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HttP42859 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HttP42859 Gm6184-201ENSMUST00000120403 1261 ntBASIC18.17■□□□□ 0.5
HttP42859 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HttP42859 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HttP42859 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HttP42859 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC18.17■□□□□ 0.5
HttP42859 Gm4913-201ENSMUST00000117075 1290 ntBASIC18.17■□□□□ 0.5
HttP42859 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC18.17■□□□□ 0.5
HttP42859 Gm11780-201ENSMUST00000136880 516 ntBASIC18.17■□□□□ 0.5
HttP42859 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC18.17■□□□□ 0.5
HttP42859 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HttP42859 AC124549.3-201ENSMUST00000225541 367 ntBASIC18.17■□□□□ 0.5
HttP42859 Rbfox2-207ENSMUST00000227533 1041 ntBASIC18.17■□□□□ 0.5
HttP42859 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC18.17■□□□□ 0.5
HttP42859 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.17■□□□□ 0.5
HttP42859 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HttP42859 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HttP42859 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HttP42859 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HttP42859 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HttP42859 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC18.16■□□□□ 0.5
HttP42859 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HttP42859 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HttP42859 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HttP42859 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HttP42859 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HttP42859 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HttP42859 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC18.16■□□□□ 0.5
HttP42859 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC18.16■□□□□ 0.5
HttP42859 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HttP42859 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HttP42859 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HttP42859 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HttP42859 Gm27000-201ENSMUST00000182943 842 ntBASIC18.16■□□□□ 0.5
HttP42859 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HttP42859 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HttP42859 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms