Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 CT954323.1-201ENSMUST00000222774 229 ntBASIC2.43□□□□□ -2.02
ShhQ62226 Mir181b-2-201ENSMUST00000083644 89 ntBASIC2.43□□□□□ -2.02
ShhQ62226 Nkain2-202ENSMUST00000092603 273 ntTSL 5 BASIC2.43□□□□□ -2.02
ShhQ62226 Olfr726-204ENSMUST00000215105 1752 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
ShhQ62226 Gm37566-201ENSMUST00000192363 4355 ntBASIC2.43□□□□□ -2.02
ShhQ62226 Olfr606-202ENSMUST00000214631 2649 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
ShhQ62226 Olfr1193-202ENSMUST00000213893 3519 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
ShhQ62226 Gm32014-202ENSMUST00000215328 4168 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
ShhQ62226 Olfr24-203ENSMUST00000216754 4327 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
ShhQ62226 Mir542-201ENSMUST00000102186 85 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm22784-201ENSMUST00000104088 132 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm26341-201ENSMUST00000104561 134 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm23841-201ENSMUST00000116951 114 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm6954-201ENSMUST00000117416 225 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm12797-201ENSMUST00000118645 273 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm12771-201ENSMUST00000120246 135 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm12926-201ENSMUST00000121158 409 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm13862-201ENSMUST00000121220 197 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm25615-201ENSMUST00000177836 94 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm22450-201ENSMUST00000179641 107 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm25473-201ENSMUST00000180191 107 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm42672-201ENSMUST00000197821 352 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm18991-201ENSMUST00000209225 746 ntBASIC2.42□□□□□ -2.02
ShhQ62226 AC122367.2-201ENSMUST00000220987 534 ntTSL 2 BASIC2.42□□□□□ -2.02
ShhQ62226 AC133598.3-201ENSMUST00000224322 568 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Defb50-201ENSMUST00000078879 373 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
ShhQ62226 Gm24856-201ENSMUST00000082809 107 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm24355-201ENSMUST00000082858 122 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm26071-201ENSMUST00000083261 107 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Mirlet7c-1-201ENSMUST00000083623 94 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Gm24521-201ENSMUST00000083958 107 ntBASIC2.42□□□□□ -2.02
ShhQ62226 Olfr814-202ENSMUST00000213742 3798 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
ShhQ62226 Olfr640-202ENSMUST00000218535 4009 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
ShhQ62226 Vmn1r29-204ENSMUST00000228038 4520 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
ShhQ62226 Olfr1025-ps1-202ENSMUST00000213474 3578 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
ShhQ62226 Olfr1477-202ENSMUST00000217001 4000 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
ShhQ62226 Gm26473-201ENSMUST00000116763 127 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Gm15162-201ENSMUST00000119325 283 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Gm14922-201ENSMUST00000121131 163 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Gm23889-201ENSMUST00000122689 104 ntBASIC2.41□□□□□ -2.02
ShhQ62226 n-R5s87-201ENSMUST00000122752 116 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Gm23892-201ENSMUST00000158105 130 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Gm23219-201ENSMUST00000158123 87 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Gm16004-201ENSMUST00000161981 311 ntTSL 5 BASIC2.41□□□□□ -2.02
ShhQ62226 Trbv18-201ENSMUST00000194256 294 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Gm43991-201ENSMUST00000203751 274 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Gm26495-201ENSMUST00000083152 137 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Gm23246-201ENSMUST00000083371 67 ntBASIC2.41□□□□□ -2.02
ShhQ62226 Olfr136-204ENSMUST00000214035 1925 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.02
ShhQ62226 Gm43753-201ENSMUST00000196539 3309 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gpr174-204ENSMUST00000120971 3588 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
ShhQ62226 Gm24079-201ENSMUST00000104352 132 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm22486-201ENSMUST00000116815 137 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm12417-201ENSMUST00000119153 403 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Rpl30-ps9-201ENSMUST00000122265 345 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm23230-201ENSMUST00000157298 133 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm22883-201ENSMUST00000157376 106 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm24475-201ENSMUST00000157435 143 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm25012-201ENSMUST00000158396 164 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm22433-201ENSMUST00000158550 142 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm2962-201ENSMUST00000159266 336 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Ear-ps4-201ENSMUST00000166834 450 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm16405-201ENSMUST00000169247 468 ntAPPRIS P1 TSL 3 BASIC2.4□□□□□ -2.03
ShhQ62226 Gm7958-201ENSMUST00000178255 468 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm7950-201ENSMUST00000179633 468 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Trav6-3-202ENSMUST00000183604 305 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
ShhQ62226 Trav6d-3-202ENSMUST00000184883 308 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
ShhQ62226 Ighv12-2-201ENSMUST00000191949 362 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Olfr375-ps1-201ENSMUST00000198131 249 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Igkv13-55-1-201ENSMUST00000200400 308 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm43993-201ENSMUST00000203972 247 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm10092-201ENSMUST00000077110 180 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm24966-201ENSMUST00000082443 79 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm25636-201ENSMUST00000082666 133 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Gm26458-201ENSMUST00000082832 128 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Ifi203-202ENSMUST00000081216 3610 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.03
ShhQ62226 CT025538.3-201ENSMUST00000225279 3848 ntBASIC2.4□□□□□ -2.03
ShhQ62226 Olfr830-202ENSMUST00000212723 3105 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
ShhQ62226 Vmn1r28-201ENSMUST00000226813 10877 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
ShhQ62226 Vmn1r28-202ENSMUST00000227805 10892 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
ShhQ62226 Trdj2-201ENSMUST00000103683 59 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
ShhQ62226 Gm24640-201ENSMUST00000116949 126 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm22626-201ENSMUST00000116990 126 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm6829-201ENSMUST00000119858 360 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm6574-201ENSMUST00000120037 362 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm25059-201ENSMUST00000157367 117 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm23901-201ENSMUST00000157570 107 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm22551-201ENSMUST00000157795 103 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm23002-201ENSMUST00000179221 107 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm24761-201ENSMUST00000179589 127 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm24488-201ENSMUST00000179934 127 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm25701-201ENSMUST00000179988 127 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm26431-201ENSMUST00000180199 127 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm27793-201ENSMUST00000183405 76 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Scgb1b13-ps-201ENSMUST00000187330 273 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm29022-201ENSMUST00000190702 225 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm43220-201ENSMUST00000199299 282 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm44533-201ENSMUST00000207782 268 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Gm45907-201ENSMUST00000213023 193 ntBASIC2.39□□□□□ -2.03
ShhQ62226 AC159709.1-201ENSMUST00000220445 349 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 76,532 protein–RNA pairs in 104.9 ms