Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Mir465b-2-201ENSMUST00000104662 79 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Gm14838-201ENSMUST00000118913 248 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Gm25321-201ENSMUST00000122558 102 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Gm13976-201ENSMUST00000154367 479 ntTSL 3 BASIC2.6□□□□□ -1.99
CtcfQ61164 Gm25910-201ENSMUST00000157620 140 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Gm25664-201ENSMUST00000157697 107 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Gm22447-201ENSMUST00000158155 92 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Gm26287-201ENSMUST00000158887 81 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Ear-ps8-201ENSMUST00000161935 354 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Gm25235-201ENSMUST00000179933 107 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Mir3068-202ENSMUST00000197755 79 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Gm9795-201ENSMUST00000062156 693 ntBASIC2.6□□□□□ -1.99
CtcfQ61164 Gm10720-201ENSMUST00000099050 669 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
CtcfQ61164 F8-202ENSMUST00000114085 7295 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
CtcfQ61164 Olfr869-201ENSMUST00000213024 1783 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
CtcfQ61164 Gm10033-201ENSMUST00000072427 1813 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm24867-201ENSMUST00000104161 107 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm6574-201ENSMUST00000120037 362 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm12721-201ENSMUST00000120621 268 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm12434-201ENSMUST00000141580 653 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CtcfQ61164 Gm25113-201ENSMUST00000157185 143 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm25428-201ENSMUST00000157608 114 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm24212-201ENSMUST00000158258 132 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm29657-201ENSMUST00000189807 342 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 AC155839.1-201ENSMUST00000200105 147 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm42739-201ENSMUST00000200687 226 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm44024-201ENSMUST00000203008 476 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm43978-201ENSMUST00000203491 451 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm45445-201ENSMUST00000209586 232 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 AC173482.5-201ENSMUST00000224181 327 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Olfr1009-201ENSMUST00000055517 945 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
CtcfQ61164 Defb21-201ENSMUST00000070722 427 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CtcfQ61164 Gm26494-201ENSMUST00000083154 143 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm23731-201ENSMUST00000083749 107 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Gm24493-201ENSMUST00000083805 143 ntBASIC2.59□□□□□ -1.99
CtcfQ61164 Vmn2r70-201ENSMUST00000168230 2565 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
CtcfQ61164 Gm12580-201ENSMUST00000127456 1751 ntTSL 1 (best) BASIC2.59□□□□□ -2
CtcfQ61164 Olfr1181-203ENSMUST00000213190 3934 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -2
CtcfQ61164 Gm12080-201ENSMUST00000119821 1883 ntBASIC2.58□□□□□ -2
CtcfQ61164 Olfr103-202ENSMUST00000173472 3079 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
CtcfQ61164 Gm37296-201ENSMUST00000192728 2922 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm23472-201ENSMUST00000101806 191 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm26154-201ENSMUST00000102339 96 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm11460-201ENSMUST00000118200 361 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm14782-201ENSMUST00000120151 195 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm14770-201ENSMUST00000122197 312 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm11712-201ENSMUST00000129139 367 ntTSL 5 BASIC2.58□□□□□ -2
CtcfQ61164 Gm25390-201ENSMUST00000157341 103 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm22145-201ENSMUST00000157396 148 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm2962-201ENSMUST00000159266 336 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm16004-201ENSMUST00000161981 311 ntTSL 5 BASIC2.58□□□□□ -2
CtcfQ61164 Mir3076-201ENSMUST00000175415 60 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm24497-201ENSMUST00000177868 191 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm44322-201ENSMUST00000196830 115 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm45791-201ENSMUST00000212908 352 ntBASIC2.58□□□□□ -2
CtcfQ61164 AC155712.1-201ENSMUST00000219704 160 ntBASIC2.58□□□□□ -2
CtcfQ61164 AC154328.1-201ENSMUST00000225875 307 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm24313-201ENSMUST00000082561 133 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm25796-201ENSMUST00000082645 163 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm23444-201ENSMUST00000082922 191 ntBASIC2.58□□□□□ -2
CtcfQ61164 Gm25651-201ENSMUST00000083782 119 ntBASIC2.58□□□□□ -2
CtcfQ61164 Zfp119a-201ENSMUST00000079642 2018 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CtcfQ61164 Mir541-201ENSMUST00000102097 90 ntBASIC2.57□□□□□ -2
CtcfQ61164 Traj6-201ENSMUST00000103734 62 ntAPPRIS P1 BASIC2.57□□□□□ -2
CtcfQ61164 Gm23202-201ENSMUST00000104376 129 ntBASIC2.57□□□□□ -2
CtcfQ61164 Gm26280-201ENSMUST00000157096 101 ntBASIC2.57□□□□□ -2
CtcfQ61164 Gm22315-201ENSMUST00000158010 143 ntBASIC2.57□□□□□ -2
CtcfQ61164 Gm24308-201ENSMUST00000177773 114 ntBASIC2.57□□□□□ -2
CtcfQ61164 Gm28453-203ENSMUST00000187041 189 ntBASIC2.57□□□□□ -2
CtcfQ61164 1700010N08Rik-201ENSMUST00000187456 189 ntBASIC2.57□□□□□ -2
CtcfQ61164 Igkv2-93-1-201ENSMUST00000196774 272 ntBASIC2.57□□□□□ -2
CtcfQ61164 Klk1b28-ps-201ENSMUST00000206374 217 ntBASIC2.57□□□□□ -2
CtcfQ61164 AC127578.1-201ENSMUST00000227289 93 ntBASIC2.57□□□□□ -2
CtcfQ61164 Snord47-201ENSMUST00000083034 77 ntBASIC2.57□□□□□ -2
CtcfQ61164 Gm25896-201ENSMUST00000083713 136 ntBASIC2.57□□□□□ -2
CtcfQ61164 Gm23040-201ENSMUST00000083869 163 ntBASIC2.57□□□□□ -2
CtcfQ61164 Gm44680-201ENSMUST00000208414 2910 ntBASIC2.56□□□□□ -2
CtcfQ61164 Adgrg4-205ENSMUST00000154818 8857 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
CtcfQ61164 Mir682-201ENSMUST00000102281 96 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm22782-201ENSMUST00000104082 132 ntBASIC2.56□□□□□ -2
CtcfQ61164 Mir669d-201ENSMUST00000104644 121 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm12417-201ENSMUST00000119153 403 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm13729-201ENSMUST00000120328 406 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm22482-201ENSMUST00000122563 359 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm24304-201ENSMUST00000177635 107 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm29014-201ENSMUST00000191422 326 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm43680-201ENSMUST00000199466 340 ntBASIC2.56□□□□□ -2
CtcfQ61164 Vmn1r-ps16-201ENSMUST00000204747 105 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm18991-201ENSMUST00000209225 746 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm34276-201ENSMUST00000222558 439 ntTSL 5 BASIC2.56□□□□□ -2
CtcfQ61164 Gm23678-201ENSMUST00000083157 107 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm23461-201ENSMUST00000083265 107 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm42635-201ENSMUST00000200266 2571 ntBASIC2.56□□□□□ -2
CtcfQ61164 Gm45257-201ENSMUST00000210301 3998 ntBASIC2.56□□□□□ -2
CtcfQ61164 AC153967.1-201ENSMUST00000219333 3190 ntBASIC2.55□□□□□ -2
CtcfQ61164 Olfr1206-202ENSMUST00000216950 3303 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CtcfQ61164 Vmn1r78-202ENSMUST00000228244 7931 ntAPPRIS P1 BASIC2.55□□□□□ -2
CtcfQ61164 Gm24282-201ENSMUST00000104232 66 ntBASIC2.55□□□□□ -2
CtcfQ61164 Gm26342-201ENSMUST00000104557 129 ntBASIC2.55□□□□□ -2
CtcfQ61164 Gm15162-201ENSMUST00000119325 283 ntBASIC2.55□□□□□ -2
Retrieved 100 of 76,532 protein–RNA pairs in 84.8 ms