Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm21798-201ENSMUST00000180105 261 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Mir6399-201ENSMUST00000184050 84 ntBASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Gm37089-201ENSMUST00000195616 129 ntBASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Gm34411-201ENSMUST00000201180 280 ntTSL 3 BASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Gm44459-201ENSMUST00000203926 160 ntBASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 AC115735.1-201ENSMUST00000226633 350 ntBASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Gm10720-201ENSMUST00000099050 669 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Vmn1r87-202ENSMUST00000211249 1835 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 AC164164.1-201ENSMUST00000223245 2340 ntBASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Zbtb37-203ENSMUST00000162226 18814 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
Ddb1Q3U1J4 Ifi203-205ENSMUST00000129829 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Traj56-201ENSMUST00000103689 63 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Gm12550-201ENSMUST00000118478 329 ntBASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Rps13-ps8-201ENSMUST00000118906 401 ntBASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Atp5k-ps2-201ENSMUST00000120437 210 ntBASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Gm12042-201ENSMUST00000120479 301 ntBASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Gm7209-201ENSMUST00000122339 333 ntBASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Gm22027-201ENSMUST00000122737 127 ntBASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Gm25749-201ENSMUST00000175485 111 ntBASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Gm22348-201ENSMUST00000178674 79 ntBASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Gm32250-201ENSMUST00000191885 322 ntTSL 3 BASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Gm22978-201ENSMUST00000082607 160 ntBASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Vmn2r66-201ENSMUST00000124773 2556 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Olfr1039-203ENSMUST00000216566 4166 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
Ddb1Q3U1J4 Gm37928-201ENSMUST00000193265 4131 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Olfr1454-202ENSMUST00000213806 3906 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Zfp953-201ENSMUST00000081582 4677 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Traj6-201ENSMUST00000103734 62 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gm14838-201ENSMUST00000118913 248 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gm25625-201ENSMUST00000157221 96 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gm24212-201ENSMUST00000158258 132 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gm22858-201ENSMUST00000174972 76 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gm27545-201ENSMUST00000184755 202 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gm29005-201ENSMUST00000186773 320 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gm29167-201ENSMUST00000190024 377 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gm6801-201ENSMUST00000190697 339 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Olfr1421-ps1-201ENSMUST00000208900 208 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Mir124a-3-201ENSMUST00000083520 68 ntBASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gpr174-204ENSMUST00000120971 3588 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
Ddb1Q3U1J4 Gm24423-201ENSMUST00000101982 106 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Snora36b-201ENSMUST00000104383 132 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Gm11285-201ENSMUST00000118443 322 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Gm22215-201ENSMUST00000157558 96 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Gm23640-201ENSMUST00000157860 104 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Gm26287-201ENSMUST00000158887 81 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Gm7592-201ENSMUST00000160674 627 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Gm7582-201ENSMUST00000160831 603 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Gm16111-201ENSMUST00000162128 285 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Ear-ps4-201ENSMUST00000166834 450 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 Mir465d-201ENSMUST00000196314 58 ntBASIC3.1□□□□□ -1.91
Ddb1Q3U1J4 U2surp-202ENSMUST00000079659 7630 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
Ddb1Q3U1J4 n-R5s26-201ENSMUST00000104601 122 ntBASIC3.09□□□□□ -1.91
Ddb1Q3U1J4 Gm22321-201ENSMUST00000157152 104 ntBASIC3.09□□□□□ -1.91
Ddb1Q3U1J4 Gm25113-201ENSMUST00000157185 143 ntBASIC3.09□□□□□ -1.91
Ddb1Q3U1J4 Gm22537-201ENSMUST00000158172 199 ntBASIC3.09□□□□□ -1.91
Ddb1Q3U1J4 Gm5224-201ENSMUST00000183060 350 ntBASIC3.09□□□□□ -1.91
Ddb1Q3U1J4 AC159709.1-201ENSMUST00000220445 349 ntBASIC3.09□□□□□ -1.91
Ddb1Q3U1J4 AC168062.3-201ENSMUST00000227025 165 ntBASIC3.09□□□□□ -1.91
Ddb1Q3U1J4 Mir222-201ENSMUST00000083537 79 ntBASIC3.09□□□□□ -1.91
Ddb1Q3U1J4 Gm42445-201ENSMUST00000196996 2893 ntBASIC3.09□□□□□ -1.92
Ddb1Q3U1J4 Olfr811-204ENSMUST00000217571 2399 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Igkv2-109-201ENSMUST00000103322 374 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm25421-201ENSMUST00000104218 164 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm23841-201ENSMUST00000116951 114 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm12797-201ENSMUST00000118645 273 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm12721-201ENSMUST00000120621 268 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm14846-201ENSMUST00000121868 216 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm25720-201ENSMUST00000157503 105 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm25654-201ENSMUST00000158467 88 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm17677-201ENSMUST00000166746 351 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm25457-201ENSMUST00000179509 107 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm27271-201ENSMUST00000183509 170 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm27540-201ENSMUST00000184950 187 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Olfr797-ps1-201ENSMUST00000203614 415 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 AC158597.1-201ENSMUST00000216234 150 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 AC173482.5-201ENSMUST00000224181 327 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Gm23040-201ENSMUST00000083869 163 ntBASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Olfr623-202ENSMUST00000213840 3980 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
Ddb1Q3U1J4 Olfr726-204ENSMUST00000215105 1752 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Olfr339-202ENSMUST00000216645 4867 ntAPPRIS P1 TSL 3 BASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Olfr1148-202ENSMUST00000215230 3095 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Gm23982-201ENSMUST00000157141 106 ntBASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Gm14435-203ENSMUST00000172025 192 ntTSL 5 BASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Gm17067-202ENSMUST00000180131 123 ntBASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Mir8116-201ENSMUST00000184134 97 ntBASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Gm28453-203ENSMUST00000187041 189 ntBASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 1700010N08Rik-201ENSMUST00000187456 189 ntBASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Gm29657-201ENSMUST00000189807 342 ntBASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Gm20005-201ENSMUST00000202583 299 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Gm10139-201ENSMUST00000081471 171 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Gm10192-201ENSMUST00000086672 327 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Gm14440-201ENSMUST00000098998 192 ntTSL 5 BASIC3.07□□□□□ -1.92
Ddb1Q3U1J4 Igkv8-16-201ENSMUST00000103392 362 ntAPPRIS ALT2 BASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm23013-201ENSMUST00000104146 106 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm23010-201ENSMUST00000104151 126 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm26249-201ENSMUST00000116708 118 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm22713-201ENSMUST00000116895 130 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm14215-201ENSMUST00000120578 221 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm25428-201ENSMUST00000157608 114 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Ear-ps8-201ENSMUST00000161935 354 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 76,532 protein–RNA pairs in 160.9 ms