Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 AC153967.1-201ENSMUST00000219333 3190 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Nlrp9c-202ENSMUST00000085944 3216 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
ShhQ62226 Mir682-201ENSMUST00000102281 96 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm26015-201ENSMUST00000104402 125 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Mir881-201ENSMUST00000104844 78 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm25316-201ENSMUST00000116826 118 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm22713-201ENSMUST00000116895 130 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm12513-201ENSMUST00000118617 352 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm14215-201ENSMUST00000120578 221 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm15272-201ENSMUST00000120865 233 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm23409-201ENSMUST00000158516 237 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm24736-201ENSMUST00000158862 130 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm7592-201ENSMUST00000160674 627 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm14435-203ENSMUST00000172025 192 ntTSL 5 BASIC2.47□□□□□ -2.01
ShhQ62226 Gm25476-201ENSMUST00000175125 185 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm20630-201ENSMUST00000177387 551 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm17067-202ENSMUST00000180131 123 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm27540-201ENSMUST00000184950 187 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm6060-201ENSMUST00000188671 251 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Olfr420-202ENSMUST00000213748 3806 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
ShhQ62226 AC159632.1-201ENSMUST00000221808 317 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
ShhQ62226 AC123860.1-201ENSMUST00000228033 481 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm24042-201ENSMUST00000083114 103 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm26265-201ENSMUST00000083277 135 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Gm14440-201ENSMUST00000098998 192 ntTSL 5 BASIC2.47□□□□□ -2.01
ShhQ62226 Olfr218-203ENSMUST00000216603 3623 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
ShhQ62226 Mgat4c-211ENSMUST00000163753 3862 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
ShhQ62226 Gm8935-201ENSMUST00000066794 2798 ntBASIC2.47□□□□□ -2.01
ShhQ62226 Olfr251-202ENSMUST00000214865 4930 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
ShhQ62226 Vmn1r178-205ENSMUST00000227993 2518 ntAPPRIS P1 BASIC2.46□□□□□ -2.01
ShhQ62226 AC164297.1-201ENSMUST00000224484 1561 ntBASIC2.46□□□□□ -2.02
ShhQ62226 Gm12042-201ENSMUST00000120479 301 ntBASIC2.46□□□□□ -2.02
ShhQ62226 Gm15536-201ENSMUST00000121411 114 ntBASIC2.46□□□□□ -2.02
ShhQ62226 Gm22321-201ENSMUST00000157152 104 ntBASIC2.46□□□□□ -2.02
ShhQ62226 Gm26406-201ENSMUST00000158503 124 ntBASIC2.46□□□□□ -2.02
ShhQ62226 Gm24082-201ENSMUST00000175175 83 ntBASIC2.46□□□□□ -2.02
ShhQ62226 Mir7242-201ENSMUST00000183710 79 ntBASIC2.46□□□□□ -2.02
ShhQ62226 Gm27786-201ENSMUST00000184337 70 ntBASIC2.46□□□□□ -2.02
ShhQ62226 AC123709.1-201ENSMUST00000224848 345 ntBASIC2.46□□□□□ -2.02
ShhQ62226 Gm6030-201ENSMUST00000078768 402 ntBASIC2.46□□□□□ -2.02
ShhQ62226 Tlr3-201ENSMUST00000034056 4407 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
ShhQ62226 Ifi203-201ENSMUST00000042228 3754 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
ShhQ62226 Olfr857-203ENSMUST00000217450 2271 ntTSL 3 BASIC2.45□□□□□ -2.02
ShhQ62226 Olfr136-205ENSMUST00000216963 1821 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
ShhQ62226 Zfp988-201ENSMUST00000148762 2800 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
ShhQ62226 Gm23705-201ENSMUST00000104370 130 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Gm11786-201ENSMUST00000120799 155 ntBASIC2.45□□□□□ -2.02
ShhQ62226 DQ267100-201ENSMUST00000122600 72 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Gm26099-201ENSMUST00000157248 109 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Gm22800-201ENSMUST00000175627 94 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Gm27761-201ENSMUST00000184091 131 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Gm19901-201ENSMUST00000192191 495 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Gm37037-201ENSMUST00000194475 424 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Gm26265-202ENSMUST00000196326 133 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Vmn1r-ps6-202ENSMUST00000202526 135 ntTSL 5 BASIC2.45□□□□□ -2.02
ShhQ62226 Gm44024-201ENSMUST00000203008 476 ntBASIC2.45□□□□□ -2.02
ShhQ62226 AC114010.1-201ENSMUST00000222060 379 ntBASIC2.45□□□□□ -2.02
ShhQ62226 AC027184.1-201ENSMUST00000226991 424 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Gm22299-201ENSMUST00000082663 136 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Gm43889-201ENSMUST00000203950 3681 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Olfr1229-203ENSMUST00000214593 3404 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
ShhQ62226 Gm37063-201ENSMUST00000194678 3520 ntBASIC2.45□□□□□ -2.02
ShhQ62226 Zfp953-201ENSMUST00000081582 4677 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
ShhQ62226 Olfr498-201ENSMUST00000217616 2260 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
ShhQ62226 AW554918-203ENSMUST00000100131 1684 ntTSL 5 BASIC2.44□□□□□ -2.02
ShhQ62226 Gm22678-201ENSMUST00000116974 101 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm12351-201ENSMUST00000118727 292 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm15365-201ENSMUST00000122392 300 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm25664-201ENSMUST00000157697 107 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm24210-201ENSMUST00000158263 133 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm22416-201ENSMUST00000158590 88 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm25119-201ENSMUST00000158815 88 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm22264-201ENSMUST00000178200 107 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm25235-201ENSMUST00000179933 107 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Mir6540-201ENSMUST00000184886 108 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm29657-201ENSMUST00000189807 342 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm37754-201ENSMUST00000194406 452 ntTSL 5 BASIC2.44□□□□□ -2.02
ShhQ62226 Gm25820-201ENSMUST00000198589 127 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm20144-201ENSMUST00000203031 165 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm45150-201ENSMUST00000206051 467 ntBASIC2.44□□□□□ -2.02
ShhQ62226 4930598N05Rik-207ENSMUST00000208997 83 ntTSL 5 BASIC2.44□□□□□ -2.02
ShhQ62226 AC141895.1-201ENSMUST00000218141 273 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm25589-201ENSMUST00000082502 166 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm25930-201ENSMUST00000082785 107 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm23264-201ENSMUST00000083372 107 ntBASIC2.44□□□□□ -2.02
ShhQ62226 AC125223.3-201ENSMUST00000223588 2067 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Gm38162-201ENSMUST00000195562 4597 ntBASIC2.44□□□□□ -2.02
ShhQ62226 Rgs18-201ENSMUST00000027603 2031 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
ShhQ62226 Vmn1r76-203ENSMUST00000226947 8145 ntAPPRIS ALT2 BASIC2.44□□□□□ -2.02
ShhQ62226 Gm12580-201ENSMUST00000127456 1751 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
ShhQ62226 Hif1a-202ENSMUST00000110461 4385 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
ShhQ62226 Igkv8-16-201ENSMUST00000103392 362 ntAPPRIS ALT2 BASIC2.43□□□□□ -2.02
ShhQ62226 Gm11285-201ENSMUST00000118443 322 ntBASIC2.43□□□□□ -2.02
ShhQ62226 Gm24291-201ENSMUST00000157633 162 ntBASIC2.43□□□□□ -2.02
ShhQ62226 Gm24392-201ENSMUST00000158136 103 ntBASIC2.43□□□□□ -2.02
ShhQ62226 Gm24667-201ENSMUST00000158938 103 ntBASIC2.43□□□□□ -2.02
ShhQ62226 Gm25024-201ENSMUST00000179667 104 ntBASIC2.43□□□□□ -2.02
ShhQ62226 Gm28453-203ENSMUST00000187041 189 ntBASIC2.43□□□□□ -2.02
ShhQ62226 1700010N08Rik-201ENSMUST00000187456 189 ntBASIC2.43□□□□□ -2.02
ShhQ62226 Gm44853-201ENSMUST00000209070 250 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 76,532 protein–RNA pairs in 99.4 ms