Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm15611-201ENSMUST00000146928 406 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
Trim40Q3UWA4 Gm22242-201ENSMUST00000175224 118 ntBASIC1.82□□□□□ -2.12
Trim40Q3UWA4 Gm29167-201ENSMUST00000190024 377 ntBASIC1.82□□□□□ -2.12
Trim40Q3UWA4 Gm36891-201ENSMUST00000191995 655 ntBASIC1.82□□□□□ -2.12
Trim40Q3UWA4 Gm44858-201ENSMUST00000207360 154 ntBASIC1.82□□□□□ -2.12
Trim40Q3UWA4 Mir107-201ENSMUST00000083660 87 ntBASIC1.82□□□□□ -2.12
Trim40Q3UWA4 Gm45518-201ENSMUST00000210776 2583 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
Trim40Q3UWA4 CT030170.3-201ENSMUST00000221205 1815 ntBASIC1.82□□□□□ -2.12
Trim40Q3UWA4 Traj56-201ENSMUST00000103689 63 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Gm12647-201ENSMUST00000118977 265 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Gm12926-201ENSMUST00000121158 409 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Rpl31-ps14-201ENSMUST00000143596 378 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Gm25115-201ENSMUST00000157187 140 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Gm22727-201ENSMUST00000158090 116 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Gm25863-201ENSMUST00000158249 329 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Gm24837-201ENSMUST00000158683 81 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Gm22114-201ENSMUST00000177756 107 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Ighv1-1-201ENSMUST00000194912 291 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 AC115291.1-201ENSMUST00000226803 258 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 AC183096.2-201ENSMUST00000228733 457 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Mir29c-201ENSMUST00000083614 88 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 A630081D01Rik-201ENSMUST00000195842 1833 ntBASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Vmn1r178-202ENSMUST00000226450 2880 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Vmn1r185-210ENSMUST00000228367 6982 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
Trim40Q3UWA4 Agmo-201ENSMUST00000049874 2423 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm24274-201ENSMUST00000116787 124 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm22193-201ENSMUST00000116868 76 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm14761-201ENSMUST00000121363 262 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm22479-201ENSMUST00000122566 81 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm25805-201ENSMUST00000122788 108 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm23232-201ENSMUST00000157300 105 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm25051-201ENSMUST00000158602 249 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm26157-201ENSMUST00000158974 126 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Vmn1r-ps59-201ENSMUST00000172698 199 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Vmn2r-ps65-201ENSMUST00000173309 220 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm27878-201ENSMUST00000184000 106 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Ska2l-ps-201ENSMUST00000186208 360 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm37713-201ENSMUST00000191746 198 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm26265-202ENSMUST00000196326 133 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Snord43-201ENSMUST00000199549 108 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Mir1291-201ENSMUST00000199842 117 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Scgb2b2-202ENSMUST00000205821 357 ntTSL 5 BASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Olfr1108-ps1-201ENSMUST00000216930 121 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm24356-201ENSMUST00000082859 106 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Snora34-201ENSMUST00000083402 138 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Gm23851-201ENSMUST00000083831 103 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Snora33-201ENSMUST00000093556 129 ntBASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Ifi203-205ENSMUST00000129829 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Vmn1r29-202ENSMUST00000226971 4714 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
Trim40Q3UWA4 C230088H06Rik-202ENSMUST00000181752 3010 ntTSL 5 BASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Skint5-203ENSMUST00000170105 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
Trim40Q3UWA4 Olfr1228-203ENSMUST00000216392 2145 ntAPPRIS ALT2 TSL 5 BASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm4746-201ENSMUST00000120395 2406 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm24098-201ENSMUST00000102075 109 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm25381-201ENSMUST00000102078 109 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm25090-201ENSMUST00000104000 132 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm11786-201ENSMUST00000120799 155 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm23535-201ENSMUST00000157542 106 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Mir5624-201ENSMUST00000176635 61 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm24656-201ENSMUST00000177548 132 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm23355-201ENSMUST00000177614 107 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm23148-201ENSMUST00000180367 107 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Mir6379-201ENSMUST00000183392 115 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm36946-201ENSMUST00000192706 435 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm43993-201ENSMUST00000203972 247 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm44473-201ENSMUST00000204039 152 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Vmn1r-ps13-201ENSMUST00000204697 134 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 AC116460.1-201ENSMUST00000219040 313 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 AC134860.6-201ENSMUST00000226038 285 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm24165-201ENSMUST00000082718 128 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm25258-201ENSMUST00000083049 107 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Mir193a-201ENSMUST00000083461 66 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Mir181a-2-201ENSMUST00000083489 76 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Gm26175-201ENSMUST00000083794 131 ntBASIC1.79□□□□□ -2.12
Trim40Q3UWA4 mt-Nd4-201ENSMUST00000082414 1378 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Olfr576-201ENSMUST00000098213 3132 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
Trim40Q3UWA4 Olfr948-202ENSMUST00000216132 4164 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Ifi214-203ENSMUST00000139092 2888 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm15526-201ENSMUST00000112504 204 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm12924-201ENSMUST00000121747 318 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm12956-201ENSMUST00000122184 414 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm24630-201ENSMUST00000122768 106 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm25994-201ENSMUST00000175392 101 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm26864-201ENSMUST00000181346 156 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm27271-201ENSMUST00000183509 170 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm27399-201ENSMUST00000184250 78 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm29512-201ENSMUST00000185544 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm28110-201ENSMUST00000185782 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm29057-201ENSMUST00000186468 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm29661-201ENSMUST00000186781 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm28737-201ENSMUST00000186808 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm29118-201ENSMUST00000186908 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm28433-201ENSMUST00000187085 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm28759-201ENSMUST00000187621 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm28831-201ENSMUST00000187739 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm28200-201ENSMUST00000187778 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm28752-201ENSMUST00000188340 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm29378-201ENSMUST00000188723 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm28569-201ENSMUST00000188748 315 ntBASIC1.78□□□□□ -2.12
Trim40Q3UWA4 Gm28120-201ENSMUST00000188812 315 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 76,532 protein–RNA pairs in 88.6 ms