Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm42785-201ENSMUST00000202316 3835 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 AC153887.2-201ENSMUST00000219160 3838 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Dst-203ENSMUST00000115104 23279 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
Rnf40Q3U319 Gm11285-201ENSMUST00000118443 322 ntBASIC4.06□□□□□ -1.76
Rnf40Q3U319 Gm10444-201ENSMUST00000126708 148 ntBASIC4.06□□□□□ -1.76
Rnf40Q3U319 Gm25427-201ENSMUST00000157605 103 ntBASIC4.06□□□□□ -1.76
Rnf40Q3U319 Gm22177-201ENSMUST00000175002 158 ntBASIC4.06□□□□□ -1.76
Rnf40Q3U319 Mir6975-201ENSMUST00000184879 61 ntBASIC4.06□□□□□ -1.76
Rnf40Q3U319 Gm34411-201ENSMUST00000201180 280 ntTSL 3 BASIC4.06□□□□□ -1.76
Rnf40Q3U319 Olfr865-ps1-201ENSMUST00000212071 85 ntBASIC4.06□□□□□ -1.76
Rnf40Q3U319 AC122465.2-201ENSMUST00000221774 354 ntBASIC4.06□□□□□ -1.76
Rnf40Q3U319 AC154386.1-201ENSMUST00000222753 2871 ntBASIC4.06□□□□□ -1.76
Rnf40Q3U319 Gm9747-201ENSMUST00000023262 2822 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
Rnf40Q3U319 Gm38207-201ENSMUST00000193009 3505 ntBASIC4.05□□□□□ -1.76
Rnf40Q3U319 Cp-204ENSMUST00000108328 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
Rnf40Q3U319 Cfh-202ENSMUST00000111976 4365 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
Rnf40Q3U319 Cfh-201ENSMUST00000066859 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
Rnf40Q3U319 Rian-201ENSMUST00000180876 8089 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
Rnf40Q3U319 Mgat4c-201ENSMUST00000020039 3735 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
Rnf40Q3U319 Gm24788-201ENSMUST00000104283 156 ntBASIC4.05□□□□□ -1.76
Rnf40Q3U319 Gm15733-201ENSMUST00000132957 242 ntBASIC4.05□□□□□ -1.76
Rnf40Q3U319 Gm37290-201ENSMUST00000195775 339 ntBASIC4.05□□□□□ -1.76
Rnf40Q3U319 Gm44964-201ENSMUST00000207011 273 ntBASIC4.05□□□□□ -1.76
Rnf40Q3U319 AC160756.1-201ENSMUST00000227266 235 ntBASIC4.05□□□□□ -1.76
Rnf40Q3U319 Tbx22-201ENSMUST00000068451 2947 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
Rnf40Q3U319 Gm35835-202ENSMUST00000216984 3350 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
Rnf40Q3U319 Olfr665-204ENSMUST00000216971 3248 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
Rnf40Q3U319 Olfr1025-ps1-202ENSMUST00000213474 3578 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
Rnf40Q3U319 Olfr1234-203ENSMUST00000137692 3827 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
Rnf40Q3U319 Gm22527-201ENSMUST00000158816 106 ntBASIC4.04□□□□□ -1.76
Rnf40Q3U319 Gm37670-201ENSMUST00000193622 229 ntBASIC4.04□□□□□ -1.76
Rnf40Q3U319 Gm44145-201ENSMUST00000203711 172 ntTSL 3 BASIC4.04□□□□□ -1.76
Rnf40Q3U319 Tfpi-204ENSMUST00000111714 3614 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
Rnf40Q3U319 Gm37176-201ENSMUST00000193300 4051 ntBASIC4.04□□□□□ -1.76
Rnf40Q3U319 AC127302.3-201ENSMUST00000215480 2791 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 Igkv5-45-201ENSMUST00000103366 385 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm22935-201ENSMUST00000103960 104 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm26273-201ENSMUST00000104180 131 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm14674-201ENSMUST00000117816 342 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm22789-201ENSMUST00000157884 130 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm25012-201ENSMUST00000158396 164 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm20476-201ENSMUST00000172644 492 ntTSL 2 BASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm27611-201ENSMUST00000184690 108 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm27564-201ENSMUST00000185196 96 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 1700027F06Rik-201ENSMUST00000203901 243 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm45651-201ENSMUST00000210857 335 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 n-R5s85-201ENSMUST00000083453 113 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm10287-202ENSMUST00000180599 4059 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 AC157570.1-201ENSMUST00000218052 3778 ntBASIC4.03□□□□□ -1.76
Rnf40Q3U319 Gm14443-201ENSMUST00000109054 4516 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
Rnf40Q3U319 Syne2-210ENSMUST00000143031 21704 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
Rnf40Q3U319 Plek-202ENSMUST00000102881 4101 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm24125-201ENSMUST00000104105 137 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm23014-201ENSMUST00000104144 130 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm14448-201ENSMUST00000116383 210 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm8666-201ENSMUST00000117517 292 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm24896-201ENSMUST00000122741 135 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm23905-201ENSMUST00000157568 109 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm23043-201ENSMUST00000157890 109 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm17571-201ENSMUST00000167906 90 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm22108-201ENSMUST00000177961 106 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm24798-201ENSMUST00000179334 106 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Mir6933-201ENSMUST00000184982 81 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Gm28155-201ENSMUST00000191066 151 ntBASIC4.02□□□□□ -1.77
Rnf40Q3U319 Erbin-207ENSMUST00000191275 5552 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
Rnf40Q3U319 Olfr1184-202ENSMUST00000216675 3164 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
Rnf40Q3U319 Vmn1r71-208ENSMUST00000228374 3717 ntAPPRIS P2 BASIC4.01□□□□□ -1.77
Rnf40Q3U319 Olfr1253-202ENSMUST00000213484 4812 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
Rnf40Q3U319 Prrg1-210ENSMUST00000177904 3851 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm26074-201ENSMUST00000104063 129 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm15738-201ENSMUST00000131985 275 ntTSL 5 BASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm23324-201ENSMUST00000157421 131 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm23755-201ENSMUST00000157578 343 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm25913-201ENSMUST00000157617 135 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm24014-201ENSMUST00000157728 157 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm22770-201ENSMUST00000158368 67 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm23198-201ENSMUST00000158811 91 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm29658-201ENSMUST00000185404 230 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm29638-201ENSMUST00000186106 371 ntTSL 3 BASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm44084-201ENSMUST00000203947 409 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm44057-201ENSMUST00000204547 96 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 AC133517.1-202ENSMUST00000224409 233 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 AC166095.1-203ENSMUST00000224591 233 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 AC125350.4-201ENSMUST00000225895 273 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm26265-201ENSMUST00000083277 135 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm24261-201ENSMUST00000083744 104 ntBASIC4.01□□□□□ -1.77
Rnf40Q3U319 Olfr1208-203ENSMUST00000214297 2844 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
Rnf40Q3U319 Olfr862-202ENSMUST00000079660 2604 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
Rnf40Q3U319 Gm45176-201ENSMUST00000207696 4096 ntBASIC4□□□□□ -1.77
Rnf40Q3U319 Gm3956-201ENSMUST00000164882 2560 ntBASIC4□□□□□ -1.77
Rnf40Q3U319 Vmn2r36-201ENSMUST00000170402 2561 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
Rnf40Q3U319 Olfr986-203ENSMUST00000216720 3381 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
Rnf40Q3U319 Rab27b-203ENSMUST00000121693 6891 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
Rnf40Q3U319 Rpl23a-201ENSMUST00000102483 560 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
Rnf40Q3U319 Gm26076-201ENSMUST00000104065 105 ntBASIC4□□□□□ -1.77
Rnf40Q3U319 Gm22772-201ENSMUST00000104451 121 ntBASIC4□□□□□ -1.77
Rnf40Q3U319 Gm22493-201ENSMUST00000104494 132 ntBASIC4□□□□□ -1.77
Rnf40Q3U319 Gm23608-201ENSMUST00000104545 128 ntBASIC4□□□□□ -1.77
Rnf40Q3U319 Gm23023-201ENSMUST00000158767 109 ntBASIC4□□□□□ -1.77
Rnf40Q3U319 Gm27365-201ENSMUST00000184041 177 ntBASIC4□□□□□ -1.77
Retrieved 100 of 76,532 protein–RNA pairs in 92.7 ms