Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm37300-201ENSMUST00000193327 280 ntBASIC4.13□□□□□ -1.75
Rnf40Q3U319 Gm42567-201ENSMUST00000199268 352 ntTSL 3 BASIC4.13□□□□□ -1.75
Rnf40Q3U319 Gm43441-201ENSMUST00000201458 205 ntBASIC4.13□□□□□ -1.75
Rnf40Q3U319 Gm44174-201ENSMUST00000205022 141 ntTSL 2 BASIC4.13□□□□□ -1.75
Rnf40Q3U319 AC155923.1-201ENSMUST00000215676 356 ntBASIC4.13□□□□□ -1.75
Rnf40Q3U319 Gm45558-201ENSMUST00000209384 1895 ntBASIC4.13□□□□□ -1.75
Rnf40Q3U319 D3Ertd254e-201ENSMUST00000165956 6503 ntTSL 3 BASIC4.13□□□□□ -1.75
Rnf40Q3U319 Zmym2-201ENSMUST00000022511 6974 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
Rnf40Q3U319 Olfr853-202ENSMUST00000213834 3888 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
Rnf40Q3U319 Traj6-201ENSMUST00000103734 62 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
Rnf40Q3U319 Gm23697-201ENSMUST00000103897 110 ntBASIC4.12□□□□□ -1.75
Rnf40Q3U319 Gm22657-201ENSMUST00000104197 132 ntBASIC4.12□□□□□ -1.75
Rnf40Q3U319 Gm9119-201ENSMUST00000118866 495 ntBASIC4.12□□□□□ -1.75
Rnf40Q3U319 Gm22800-201ENSMUST00000175627 94 ntBASIC4.12□□□□□ -1.75
Rnf40Q3U319 Fam107b-206ENSMUST00000176254 300 ntTSL 5 BASIC4.12□□□□□ -1.75
Rnf40Q3U319 Gm26864-201ENSMUST00000181346 156 ntBASIC4.12□□□□□ -1.75
Rnf40Q3U319 Gm6801-201ENSMUST00000190697 339 ntBASIC4.12□□□□□ -1.75
Rnf40Q3U319 Gm43020-201ENSMUST00000197178 372 ntTSL 3 BASIC4.12□□□□□ -1.75
Rnf40Q3U319 AC122484.1-201ENSMUST00000221578 177 ntBASIC4.12□□□□□ -1.75
Rnf40Q3U319 Gm23928-201ENSMUST00000082469 145 ntBASIC4.12□□□□□ -1.75
Rnf40Q3U319 n-R5s220-201ENSMUST00000082926 120 ntBASIC4.12□□□□□ -1.75
Rnf40Q3U319 Olfr1323-203ENSMUST00000213556 5431 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
Rnf40Q3U319 Vmn1r66-205ENSMUST00000228622 3304 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
Rnf40Q3U319 Ankrd28-207ENSMUST00000227863 6616 ntAPPRIS ALT1 BASIC4.12□□□□□ -1.75
Rnf40Q3U319 Olfr735-202ENSMUST00000216634 3860 ntAPPRIS ALT2 TSL 3 BASIC4.12□□□□□ -1.75
Rnf40Q3U319 Olfr235-203ENSMUST00000214551 2240 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
Rnf40Q3U319 CT010444.1-201ENSMUST00000219963 3845 ntBASIC4.11□□□□□ -1.75
Rnf40Q3U319 Olfr392-202ENSMUST00000144724 3904 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
Rnf40Q3U319 Gm11471-201ENSMUST00000121824 198 ntBASIC4.11□□□□□ -1.75
Rnf40Q3U319 Gm23789-201ENSMUST00000122536 301 ntBASIC4.11□□□□□ -1.75
Rnf40Q3U319 Gm26085-201ENSMUST00000157900 116 ntBASIC4.11□□□□□ -1.75
Rnf40Q3U319 Gm17218-201ENSMUST00000165911 410 ntTSL 3 BASIC4.11□□□□□ -1.75
Rnf40Q3U319 Gm44703-201ENSMUST00000205724 248 ntBASIC4.11□□□□□ -1.75
Rnf40Q3U319 AC115735.1-201ENSMUST00000226633 350 ntBASIC4.11□□□□□ -1.75
Rnf40Q3U319 Gm22220-201ENSMUST00000082671 149 ntBASIC4.11□□□□□ -1.75
Rnf40Q3U319 Neb-203ENSMUST00000075301 21456 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
Rnf40Q3U319 AC164164.1-201ENSMUST00000223245 2340 ntBASIC4.11□□□□□ -1.75
Rnf40Q3U319 Gm42888-201ENSMUST00000202425 4361 ntBASIC4.11□□□□□ -1.75
Rnf40Q3U319 Olfr299-202ENSMUST00000217253 4479 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
Rnf40Q3U319 0610010F05Rik-201ENSMUST00000043356 4392 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
Rnf40Q3U319 Ccdc178-201ENSMUST00000025160 3335 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
Rnf40Q3U319 Zfp518a-201ENSMUST00000050092 6840 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
Rnf40Q3U319 Olfr1325-203ENSMUST00000216108 3535 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
Rnf40Q3U319 Zfp260-202ENSMUST00000108200 3604 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
Rnf40Q3U319 Gm24318-201ENSMUST00000104490 131 ntBASIC4.1□□□□□ -1.75
Rnf40Q3U319 Gm25825-201ENSMUST00000157091 124 ntBASIC4.1□□□□□ -1.75
Rnf40Q3U319 Gm24188-201ENSMUST00000157980 108 ntBASIC4.1□□□□□ -1.75
Rnf40Q3U319 Gm24217-201ENSMUST00000158260 133 ntBASIC4.1□□□□□ -1.75
Rnf40Q3U319 Snord11-201ENSMUST00000158468 84 ntBASIC4.1□□□□□ -1.75
Rnf40Q3U319 Gm25978-201ENSMUST00000158698 90 ntBASIC4.1□□□□□ -1.75
Rnf40Q3U319 Gm17133-201ENSMUST00000170636 289 ntTSL 3 BASIC4.1□□□□□ -1.75
Rnf40Q3U319 Gm24811-201ENSMUST00000175313 100 ntBASIC4.1□□□□□ -1.75
Rnf40Q3U319 AC126939.1-201ENSMUST00000224943 226 ntBASIC4.1□□□□□ -1.75
Rnf40Q3U319 Cd46-203ENSMUST00000162650 6288 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
Rnf40Q3U319 Gm29674-202ENSMUST00000219664 4083 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
Rnf40Q3U319 Fam111a-203ENSMUST00000144662 3912 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
Rnf40Q3U319 Olfr354-202ENSMUST00000217479 9539 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
Rnf40Q3U319 Tfpi-202ENSMUST00000090732 3576 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
Rnf40Q3U319 Traj50-201ENSMUST00000103693 63 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
Rnf40Q3U319 Gm14946-201ENSMUST00000119859 296 ntBASIC4.09□□□□□ -1.75
Rnf40Q3U319 Gm22451-201ENSMUST00000122803 151 ntBASIC4.09□□□□□ -1.75
Rnf40Q3U319 Gm11958-201ENSMUST00000127224 253 ntTSL 5 BASIC4.09□□□□□ -1.75
Rnf40Q3U319 Gm25382-201ENSMUST00000157811 97 ntBASIC4.09□□□□□ -1.75
Rnf40Q3U319 Gm29380-201ENSMUST00000185898 416 ntTSL 5 BASIC4.09□□□□□ -1.75
Rnf40Q3U319 Trdv1-202ENSMUST00000187163 334 ntAPPRIS ALT2 BASIC4.09□□□□□ -1.75
Rnf40Q3U319 AC125167.1-201ENSMUST00000198698 141 ntBASIC4.09□□□□□ -1.75
Rnf40Q3U319 AC153361.1-201ENSMUST00000219679 247 ntBASIC4.09□□□□□ -1.75
Rnf40Q3U319 Mir340-201ENSMUST00000083483 98 ntBASIC4.09□□□□□ -1.75
Rnf40Q3U319 Vmn1r75-206ENSMUST00000228463 6508 ntAPPRIS P2 BASIC4.09□□□□□ -1.75
Rnf40Q3U319 Obscn-203ENSMUST00000052872 23006 ntTSL 5 BASIC4.09□□□□□ -1.75
Rnf40Q3U319 Spata31-201ENSMUST00000070216 3232 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Rnf40Q3U319 Pak3-201ENSMUST00000033640 8348 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Rnf40Q3U319 Gm22899-201ENSMUST00000104540 131 ntBASIC4.08□□□□□ -1.76
Rnf40Q3U319 Gm13831-201ENSMUST00000118764 302 ntBASIC4.08□□□□□ -1.76
Rnf40Q3U319 Gm24908-201ENSMUST00000157294 127 ntBASIC4.08□□□□□ -1.76
Rnf40Q3U319 Gm27387-201ENSMUST00000184583 116 ntBASIC4.08□□□□□ -1.76
Rnf40Q3U319 Gm37672-201ENSMUST00000192682 4014 ntBASIC4.08□□□□□ -1.76
Rnf40Q3U319 Gm38356-201ENSMUST00000194313 408 ntBASIC4.08□□□□□ -1.76
Rnf40Q3U319 Gm6051-201ENSMUST00000201529 352 ntBASIC4.08□□□□□ -1.76
Rnf40Q3U319 Olfr1042-202ENSMUST00000215624 5096 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
Rnf40Q3U319 Kctd4-201ENSMUST00000050120 3998 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Rnf40Q3U319 Gm23723-201ENSMUST00000082996 132 ntBASIC4.08□□□□□ -1.76
Rnf40Q3U319 AC153948.1-201ENSMUST00000219080 3838 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Vmn1r80-209ENSMUST00000228578 11005 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
Rnf40Q3U319 Gm45130-201ENSMUST00000207574 3388 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Gm44644-202ENSMUST00000208825 3133 ntTSL 2 BASIC4.07□□□□□ -1.76
Rnf40Q3U319 Pik3c2a-201ENSMUST00000170430 8044 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
Rnf40Q3U319 Olfr898-202ENSMUST00000216304 3979 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
Rnf40Q3U319 Snord78-201ENSMUST00000104032 66 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Atp5k-ps2-201ENSMUST00000120437 210 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Gm24480-201ENSMUST00000157442 103 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Gm23152-201ENSMUST00000175322 116 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Gm27899-201ENSMUST00000184715 64 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Mir6899-201ENSMUST00000184798 64 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Gm42470-201ENSMUST00000198086 251 ntTSL 3 BASIC4.07□□□□□ -1.76
Rnf40Q3U319 Mir1291-201ENSMUST00000199842 117 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Snora34-201ENSMUST00000083402 138 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Mir9-2-201ENSMUST00000083490 72 ntBASIC4.07□□□□□ -1.76
Rnf40Q3U319 Vmn1r14-205ENSMUST00000227884 7542 ntAPPRIS P2 BASIC4.07□□□□□ -1.76
Rnf40Q3U319 Gm43486-201ENSMUST00000196431 4339 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 76,532 protein–RNA pairs in 110.9 ms