Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Defb43-201ENSMUST00000100491 408 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CtcfQ61164 Traj44-201ENSMUST00000103698 61 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
CtcfQ61164 Mir466k-201ENSMUST00000116774 122 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Gm16533-201ENSMUST00000140035 228 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Gm16218-201ENSMUST00000155424 388 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Gm23980-201ENSMUST00000157135 158 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Gm24716-201ENSMUST00000157524 104 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Mir3965-201ENSMUST00000175570 69 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Obox3-ps7-201ENSMUST00000176465 410 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Gm25121-201ENSMUST00000179846 79 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Mir6353-201ENSMUST00000183596 113 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Gm32222-201ENSMUST00000203296 298 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Olfr1304-ps1-201ENSMUST00000208032 189 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Gm20734-201ENSMUST00000216939 193 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 AC113031.4-201ENSMUST00000228381 514 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 n-R5s176-201ENSMUST00000082683 109 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Mir124a-3-201ENSMUST00000083520 68 ntBASIC2.75□□□□□ -1.97
CtcfQ61164 Vmn1r76-203ENSMUST00000226947 8145 ntAPPRIS ALT2 BASIC2.74□□□□□ -1.97
CtcfQ61164 Gm24280-201ENSMUST00000104237 134 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm11115-201ENSMUST00000113255 54 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
CtcfQ61164 Rpl23a-ps6-201ENSMUST00000119466 468 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Atp5k-ps2-201ENSMUST00000120437 210 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm14551-201ENSMUST00000120802 256 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm24630-201ENSMUST00000122768 106 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm22389-201ENSMUST00000158193 301 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 H3f3aos-202ENSMUST00000159740 229 ntTSL 5 BASIC2.74□□□□□ -1.97
CtcfQ61164 Gm16405-201ENSMUST00000169247 468 ntAPPRIS P1 TSL 3 BASIC2.74□□□□□ -1.97
CtcfQ61164 Gm7958-201ENSMUST00000178255 468 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm7950-201ENSMUST00000179633 468 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Mir7068-201ENSMUST00000183439 74 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm27699-201ENSMUST00000183553 180 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm9251-201ENSMUST00000197202 628 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm25820-201ENSMUST00000198589 127 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm34314-201ENSMUST00000203622 367 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm44555-201ENSMUST00000209008 148 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm45508-201ENSMUST00000209298 299 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 AC145736.2-201ENSMUST00000216305 365 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 CT030166.2-201ENSMUST00000222021 368 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 AC173345.1-201ENSMUST00000222837 306 ntTSL 5 BASIC2.74□□□□□ -1.97
CtcfQ61164 Gm22685-201ENSMUST00000082848 106 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Snord104-201ENSMUST00000083192 70 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm25482-201ENSMUST00000083225 107 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm6185-201ENSMUST00000193379 3553 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Zfp846-201ENSMUST00000060063 1626 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
CtcfQ61164 Gm37566-201ENSMUST00000192363 4355 ntBASIC2.74□□□□□ -1.97
CtcfQ61164 Gm13212-202ENSMUST00000105739 3595 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
CtcfQ61164 AC122828.3-201ENSMUST00000223019 3915 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Vmn1r87-202ENSMUST00000211249 1835 ntAPPRIS P1 TSL 3 BASIC2.73□□□□□ -1.97
CtcfQ61164 Olfr1177-ps-202ENSMUST00000216713 2821 ntAPPRIS P5 TSL 3 BASIC2.73□□□□□ -1.97
CtcfQ61164 n-R5s67-201ENSMUST00000104336 114 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm23836-201ENSMUST00000104434 129 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Snord72-201ENSMUST00000104549 81 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm13581-201ENSMUST00000120675 278 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm23713-201ENSMUST00000157353 70 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm24475-201ENSMUST00000157435 143 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm23901-201ENSMUST00000157570 107 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm22842-201ENSMUST00000157709 118 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm22336-201ENSMUST00000157719 107 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm24601-201ENSMUST00000157970 143 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm22615-201ENSMUST00000158102 70 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm22113-201ENSMUST00000158343 104 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm24005-201ENSMUST00000158459 296 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 4930473D10Rik-201ENSMUST00000161975 487 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CtcfQ61164 Gm4468-201ENSMUST00000170206 294 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm23921-201ENSMUST00000175258 107 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm22308-201ENSMUST00000177609 107 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm27753-201ENSMUST00000184742 203 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm32250-201ENSMUST00000191885 322 ntTSL 3 BASIC2.73□□□□□ -1.97
CtcfQ61164 Gm43250-201ENSMUST00000196536 273 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 4930431L21Rik-202ENSMUST00000200253 624 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CtcfQ61164 Gm45296-201ENSMUST00000209625 205 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm45859-201ENSMUST00000212794 214 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm18346-201ENSMUST00000216782 325 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm30534-201ENSMUST00000217928 207 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 AC122367.2-201ENSMUST00000220987 534 ntTSL 2 BASIC2.73□□□□□ -1.97
CtcfQ61164 CT485612.4-201ENSMUST00000223405 250 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Gm22997-201ENSMUST00000082845 107 ntBASIC2.73□□□□□ -1.97
CtcfQ61164 Tlr7-202ENSMUST00000112161 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CtcfQ61164 Gm7173-205ENSMUST00000197180 9412 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
CtcfQ61164 Gm26500-201ENSMUST00000101867 106 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm24122-201ENSMUST00000104107 132 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm26105-201ENSMUST00000157253 190 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm23232-201ENSMUST00000157300 105 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm25054-201ENSMUST00000157370 97 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm24348-201ENSMUST00000158710 130 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm24885-201ENSMUST00000158783 270 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm20630-201ENSMUST00000177387 551 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm22259-201ENSMUST00000178926 107 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Rpl31-ps15-201ENSMUST00000181857 375 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm3852-201ENSMUST00000182781 264 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm26979-201ENSMUST00000182971 217 ntTSL 3 BASIC2.72□□□□□ -1.97
CtcfQ61164 Gm25820-202ENSMUST00000197479 128 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm9377-201ENSMUST00000207227 623 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 AC164297.1-201ENSMUST00000224484 1561 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm22358-201ENSMUST00000082877 122 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm24457-201ENSMUST00000083196 105 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Gm25188-201ENSMUST00000083913 122 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Olfr1105-202ENSMUST00000215978 3012 ntAPPRIS P1 TSL 3 BASIC2.72□□□□□ -1.97
CtcfQ61164 Gm43540-201ENSMUST00000196320 3848 ntBASIC2.72□□□□□ -1.97
CtcfQ61164 Vmn1r76-202ENSMUST00000226300 8189 ntAPPRIS ALT2 BASIC2.71□□□□□ -1.98
Retrieved 100 of 76,532 protein–RNA pairs in 83.8 ms