Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Cntn6-202ENSMUST00000161070 3515 ntTSL 5 BASIC4.19□□□□□ -1.74
Rnf40Q3U319 Calcrl-202ENSMUST00000099944 3973 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
Rnf40Q3U319 Nlrp9a-201ENSMUST00000071780 3125 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm23594-201ENSMUST00000104307 134 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm24468-201ENSMUST00000104489 104 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm13314-201ENSMUST00000118742 335 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm15961-201ENSMUST00000156090 266 ntTSL 3 BASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm24878-201ENSMUST00000158782 104 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm27896-201ENSMUST00000175162 317 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm19898-201ENSMUST00000177490 251 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm20058-201ENSMUST00000186939 284 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm28267-201ENSMUST00000191093 265 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 AC125543.1-201ENSMUST00000222778 101 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm24099-201ENSMUST00000083384 107 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Olfr577-203ENSMUST00000215237 3144 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
Rnf40Q3U319 Gm37063-201ENSMUST00000194678 3520 ntBASIC4.18□□□□□ -1.74
Rnf40Q3U319 Olfr873-205ENSMUST00000215540 3784 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
Rnf40Q3U319 Gm14567-201ENSMUST00000117155 174 ntBASIC4.17□□□□□ -1.74
Rnf40Q3U319 Ranbp2-ps1-201ENSMUST00000184001 403 ntBASIC4.17□□□□□ -1.74
Rnf40Q3U319 Gm34583-202ENSMUST00000202537 451 ntTSL 2 BASIC4.17□□□□□ -1.74
Rnf40Q3U319 Gm44921-201ENSMUST00000205290 301 ntBASIC4.17□□□□□ -1.74
Rnf40Q3U319 Gm30409-201ENSMUST00000223302 229 ntTSL 3 BASIC4.17□□□□□ -1.74
Rnf40Q3U319 AC161758.2-201ENSMUST00000228513 218 ntBASIC4.17□□□□□ -1.74
Rnf40Q3U319 Etd-201ENSMUST00000074232 478 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
Rnf40Q3U319 Mir103-2-201ENSMUST00000083629 86 ntBASIC4.17□□□□□ -1.74
Rnf40Q3U319 Gm22826-201ENSMUST00000083774 165 ntBASIC4.17□□□□□ -1.74
Rnf40Q3U319 Mir489-201ENSMUST00000093599 107 ntBASIC4.17□□□□□ -1.74
Rnf40Q3U319 Olfr816-202ENSMUST00000213438 3306 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
Rnf40Q3U319 Csmd3-209ENSMUST00000162830 13012 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 G2e3-203ENSMUST00000121521 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Olfr924-202ENSMUST00000217350 3431 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Olfr418-202ENSMUST00000213420 4388 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Olfr105-ps-202ENSMUST00000215518 3778 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Gm25059-201ENSMUST00000157367 117 ntBASIC4.16□□□□□ -1.74
Rnf40Q3U319 Gm22079-201ENSMUST00000157592 106 ntBASIC4.16□□□□□ -1.74
Rnf40Q3U319 Mir3104-201ENSMUST00000174911 63 ntBASIC4.16□□□□□ -1.74
Rnf40Q3U319 Gm4707-202ENSMUST00000183937 276 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Gm8197-201ENSMUST00000192906 363 ntTSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Gm45499-201ENSMUST00000211656 280 ntBASIC4.16□□□□□ -1.74
Rnf40Q3U319 AC158597.1-201ENSMUST00000216234 150 ntBASIC4.16□□□□□ -1.74
Rnf40Q3U319 Gm38407-201ENSMUST00000218017 474 ntTSL 2 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Gm46998-201ENSMUST00000221444 330 ntBASIC4.16□□□□□ -1.74
Rnf40Q3U319 AC127371.3-201ENSMUST00000228129 415 ntBASIC4.16□□□□□ -1.74
Rnf40Q3U319 Gm21876-201ENSMUST00000096511 282 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Csmd3-204ENSMUST00000160658 12460 ntTSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Vmn2r78-201ENSMUST00000170835 2611 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Olfr1309-203ENSMUST00000214935 5448 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Lrif1-201ENSMUST00000098750 3103 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Ndst4-204ENSMUST00000173932 7417 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
Rnf40Q3U319 Olfr143-202ENSMUST00000213129 3449 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
Rnf40Q3U319 Olfr1325-202ENSMUST00000216007 3617 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
Rnf40Q3U319 Gm42768-201ENSMUST00000197734 2897 ntBASIC4.15□□□□□ -1.74
Rnf40Q3U319 5330434G04Rik-203ENSMUST00000142109 3449 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
Rnf40Q3U319 4932414N04Rik-204ENSMUST00000128259 3645 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm25728-201ENSMUST00000104525 159 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm11939-201ENSMUST00000104931 300 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm15949-201ENSMUST00000129485 126 ntTSL 3 BASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm14161-201ENSMUST00000137020 339 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm13307-201ENSMUST00000141375 493 ntTSL 5 BASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm23559-201ENSMUST00000157824 103 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm24277-201ENSMUST00000158661 104 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm26498-201ENSMUST00000177799 79 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm25633-201ENSMUST00000178565 107 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm26230-201ENSMUST00000180141 79 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Rpl31-ps24-201ENSMUST00000181350 379 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm27921-201ENSMUST00000183968 108 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Mir6410-201ENSMUST00000184204 104 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm45429-201ENSMUST00000209527 172 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm25588-201ENSMUST00000082501 140 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm22805-201ENSMUST00000082739 107 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Mir26a-1-201ENSMUST00000083579 90 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 BC022960-201ENSMUST00000119987 1815 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Olfr135-202ENSMUST00000213217 2917 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
Rnf40Q3U319 AC132237.1-201ENSMUST00000220950 4475 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Gm37655-201ENSMUST00000193968 4123 ntBASIC4.15□□□□□ -1.75
Rnf40Q3U319 Ifi213-202ENSMUST00000150649 2748 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
Rnf40Q3U319 Vmn1r47-202ENSMUST00000227229 6733 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
Rnf40Q3U319 Vmn1r47-204ENSMUST00000228680 6717 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
Rnf40Q3U319 Olfr1270-206ENSMUST00000217139 4803 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
Rnf40Q3U319 Mir547-201ENSMUST00000102051 78 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm7840-201ENSMUST00000122086 533 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm24572-201ENSMUST00000175505 88 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm23567-201ENSMUST00000178005 107 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm27875-201ENSMUST00000184425 123 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm28270-201ENSMUST00000188550 109 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm28328-201ENSMUST00000188869 109 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm13266-203ENSMUST00000193364 421 ntTSL 3 BASIC4.14□□□□□ -1.75
Rnf40Q3U319 Rnu3a-202ENSMUST00000196710 213 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm44515-201ENSMUST00000209045 379 ntTSL 5 BASIC4.14□□□□□ -1.75
Rnf40Q3U319 n-R5s162-201ENSMUST00000082581 119 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm23790-201ENSMUST00000083013 107 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm23507-201ENSMUST00000083078 107 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Rnu3a-201ENSMUST00000083936 214 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Vmn2r-ps36-201ENSMUST00000172589 2562 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 Gm43889-201ENSMUST00000203950 3681 ntBASIC4.14□□□□□ -1.75
Rnf40Q3U319 A630033H20Rik-206ENSMUST00000180182 2997 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
Rnf40Q3U319 Ktn1-226ENSMUST00000191511 3962 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
Rnf40Q3U319 Gm23886-201ENSMUST00000122684 313 ntBASIC4.13□□□□□ -1.75
Rnf40Q3U319 Mir6350-201ENSMUST00000183639 105 ntBASIC4.13□□□□□ -1.75
Rnf40Q3U319 Gm29406-201ENSMUST00000186400 235 ntTSL 5 BASIC4.13□□□□□ -1.75
Retrieved 100 of 76,532 protein–RNA pairs in 104 ms