Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm37377-201ENSMUST00000191733 304 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Gm44308-201ENSMUST00000197080 99 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 AC154296.1-201ENSMUST00000198150 67 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Gm22062-201ENSMUST00000082563 107 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 C230088H06Rik-202ENSMUST00000181752 3010 ntTSL 5 BASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Hif1a-202ENSMUST00000110461 4385 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Vmn1r83-202ENSMUST00000226701 2788 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Pak3-205ENSMUST00000112868 8163 ntAPPRIS P3 TSL 5 BASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm15102-201ENSMUST00000118740 1502 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Naaladl2-202ENSMUST00000203414 9330 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 n-R5s67-201ENSMUST00000104336 114 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm24890-201ENSMUST00000104389 102 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Mir344e-201ENSMUST00000104677 66 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Mir466h-201ENSMUST00000104748 81 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm13588-201ENSMUST00000120026 135 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm12686-201ENSMUST00000120546 397 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm12815-201ENSMUST00000121737 135 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm13569-201ENSMUST00000137221 574 ntTSL 3 BASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm22330-201ENSMUST00000158068 115 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Ifi206-202ENSMUST00000169797 429 ntTSL 5 BASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm23933-201ENSMUST00000178405 79 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Igkv5-40-1-201ENSMUST00000196457 359 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm42739-201ENSMUST00000200687 226 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm2511-201ENSMUST00000205521 457 ntTSL 3 BASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 AC129202.2-201ENSMUST00000225123 177 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Gm24457-201ENSMUST00000083196 105 ntBASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Ifi203-202ENSMUST00000081216 3610 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
Ddb1Q3U1J4 Mgat4c-201ENSMUST00000020039 3735 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Gm44230-201ENSMUST00000203032 3550 ntBASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Olfr109-203ENSMUST00000214938 5550 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Gm24582-201ENSMUST00000103967 103 ntBASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Gm25377-201ENSMUST00000104334 129 ntBASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Gm25269-201ENSMUST00000122601 104 ntBASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Nell1os-202ENSMUST00000136672 491 ntTSL 5 BASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Gm37763-201ENSMUST00000193445 120 ntBASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Gm37664-201ENSMUST00000194607 3813 ntBASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 CT030159.4-201ENSMUST00000221966 395 ntBASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 AC100209.2-201ENSMUST00000224461 451 ntBASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Gm5239-201ENSMUST00000081864 369 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
Ddb1Q3U1J4 Olfr420-202ENSMUST00000213748 3806 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Olfr1135-202ENSMUST00000213835 2648 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Gm13432-201ENSMUST00000118861 241 ntBASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Gm22336-201ENSMUST00000157719 107 ntBASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Mir6406-201ENSMUST00000183592 120 ntBASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Gm27470-201ENSMUST00000184070 210 ntBASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Gm29155-202ENSMUST00000186289 216 ntTSL 5 BASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Gm45859-201ENSMUST00000212794 214 ntBASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Gm9174-201ENSMUST00000078149 255 ntBASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Gm24152-201ENSMUST00000082764 163 ntBASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Mirlet7c-1-201ENSMUST00000083623 94 ntBASIC3.29□□□□□ -1.88
Ddb1Q3U1J4 Vmn2r74-201ENSMUST00000166355 2562 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Skint2-203ENSMUST00000106560 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Gm13756-201ENSMUST00000117618 222 ntBASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Gm25543-201ENSMUST00000122678 312 ntBASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Gm26099-201ENSMUST00000157248 109 ntBASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Gm24908-201ENSMUST00000157294 127 ntBASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Mir6336-201ENSMUST00000183581 130 ntBASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Gm35077-201ENSMUST00000204999 275 ntTSL 3 BASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Gm45092-201ENSMUST00000205944 545 ntTSL 3 BASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Gm45508-201ENSMUST00000209298 299 ntBASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Mir322-201ENSMUST00000083484 95 ntBASIC3.28□□□□□ -1.88
Ddb1Q3U1J4 Mir872-201ENSMUST00000104728 81 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm14069-201ENSMUST00000120815 229 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm15903-201ENSMUST00000155796 310 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm22842-201ENSMUST00000157709 118 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm22316-201ENSMUST00000158012 216 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm24878-201ENSMUST00000158782 104 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm44476-201ENSMUST00000196225 91 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm44425-201ENSMUST00000203739 429 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Klk1b28-ps-201ENSMUST00000206374 217 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm20734-201ENSMUST00000216939 193 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm25482-201ENSMUST00000083225 107 ntBASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Olfr894-202ENSMUST00000212992 3234 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Olfr509-202ENSMUST00000213756 3547 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Olfr1477-202ENSMUST00000217001 4000 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
Ddb1Q3U1J4 Gm44715-201ENSMUST00000209049 3839 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Vmn2r68-201ENSMUST00000061074 2556 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Mir92-1-201ENSMUST00000102108 80 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Gm14782-201ENSMUST00000120151 195 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Gm27396-201ENSMUST00000157708 58 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Gm24846-201ENSMUST00000158033 108 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Gm23476-201ENSMUST00000158881 274 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 B230216N24Rik-202ENSMUST00000159353 345 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Mup-ps11-201ENSMUST00000178040 545 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Mup-ps3-201ENSMUST00000178315 545 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Mir3068-202ENSMUST00000197755 79 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Igkv14-118-1-201ENSMUST00000198645 334 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Igkv13-71-1-201ENSMUST00000199934 264 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Gm20083-201ENSMUST00000205849 751 ntTSL 3 BASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Gm7065-201ENSMUST00000222150 474 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Gm23738-201ENSMUST00000082828 171 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Gm10509-201ENSMUST00000097384 259 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Olfr1270-204ENSMUST00000215975 4854 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 AC153526.2-201ENSMUST00000218206 2031 ntBASIC3.26□□□□□ -1.89
Ddb1Q3U1J4 Mir297a-2-201ENSMUST00000103795 90 ntBASIC3.25□□□□□ -1.89
Ddb1Q3U1J4 Gm13992-201ENSMUST00000120558 156 ntBASIC3.25□□□□□ -1.89
Ddb1Q3U1J4 Gm23548-201ENSMUST00000158963 106 ntBASIC3.25□□□□□ -1.89
Ddb1Q3U1J4 Gm26200-201ENSMUST00000180273 79 ntBASIC3.25□□□□□ -1.89
Ddb1Q3U1J4 Gm29658-201ENSMUST00000185404 230 ntBASIC3.25□□□□□ -1.89
Ddb1Q3U1J4 Gm29262-201ENSMUST00000190084 196 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 76,532 protein–RNA pairs in 148.7 ms