| Hoxa11 | P31311 | Gm18341-201 | ENSMUST00000197538 | 622 nt | BASIC | 2.77 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Vmn1r-ps6-202 | ENSMUST00000202526 | 135 nt | TSL 5 BASIC | 2.77 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm15102-201 | ENSMUST00000118740 | 1502 nt | BASIC | 2.77 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm10033-201 | ENSMUST00000072427 | 1813 nt | BASIC | 2.77 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Olfr1046-202 | ENSMUST00000213987 | 2770 nt | APPRIS P1 TSL 5 BASIC | 2.77 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Cylc1-201 | ENSMUST00000101282 | 1923 nt | APPRIS P2 TSL 1 (best) BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | U2surp-202 | ENSMUST00000079659 | 7630 nt | APPRIS P1 TSL 1 (best) BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm23472-201 | ENSMUST00000101806 | 191 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24640-201 | ENSMUST00000116949 | 126 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm22626-201 | ENSMUST00000116990 | 126 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm12443-201 | ENSMUST00000122308 | 323 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm26479-201 | ENSMUST00000122620 | 106 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | n-R5s87-201 | ENSMUST00000122752 | 116 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm23559-201 | ENSMUST00000157824 | 103 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24212-201 | ENSMUST00000158258 | 132 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Mir3075-201 | ENSMUST00000175340 | 85 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24497-201 | ENSMUST00000177868 | 191 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24761-201 | ENSMUST00000179589 | 127 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm25939-201 | ENSMUST00000179876 | 191 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24488-201 | ENSMUST00000179934 | 127 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm25701-201 | ENSMUST00000179988 | 127 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm26431-201 | ENSMUST00000180199 | 127 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Rgs1-208 | ENSMUST00000189061 | 3841 nt | APPRIS P1 TSL 1 (best) BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm28848-201 | ENSMUST00000189984 | 168 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm43978-201 | ENSMUST00000203491 | 451 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | AC125350.4-201 | ENSMUST00000225895 | 273 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm5899-201 | ENSMUST00000071770 | 270 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm23444-201 | ENSMUST00000082922 | 191 nt | BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Tlr3-202 | ENSMUST00000167106 | 4093 nt | APPRIS P1 TSL 1 (best) BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Olfr1463-202 | ENSMUST00000207246 | 2315 nt | APPRIS P1 TSL 2 BASIC | 2.76 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Slc16a7-206 | ENSMUST00000211781 | 10981 nt | APPRIS P1 TSL 1 (best) BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Olfr811-204 | ENSMUST00000217571 | 2399 nt | APPRIS P1 TSL 5 BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm22984-201 | ENSMUST00000122751 | 122 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm23901-201 | ENSMUST00000157570 | 107 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24726-201 | ENSMUST00000158232 | 121 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Ear-ps4-201 | ENSMUST00000166834 | 450 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm16405-201 | ENSMUST00000169247 | 468 nt | APPRIS P1 TSL 3 BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24308-201 | ENSMUST00000177773 | 114 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm7958-201 | ENSMUST00000178255 | 468 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24799-201 | ENSMUST00000178431 | 79 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm7950-201 | ENSMUST00000179633 | 468 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm5224-201 | ENSMUST00000183060 | 350 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Trav6-3-202 | ENSMUST00000183604 | 305 nt | APPRIS P1 BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Trav6d-3-202 | ENSMUST00000184883 | 308 nt | APPRIS P1 BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm40810-201 | ENSMUST00000219149 | 253 nt | BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Olfr830-202 | ENSMUST00000212723 | 3105 nt | APPRIS ALT2 TSL 5 BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Olfr1457-204 | ENSMUST00000215229 | 2538 nt | APPRIS P1 TSL 5 BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Ranbp2-201 | ENSMUST00000003310 | 9608 nt | APPRIS P1 TSL 5 BASIC | 2.75 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Cyp3a41a-201 | ENSMUST00000094111 | 2060 nt | APPRIS P1 TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Vmn1r76-202 | ENSMUST00000226300 | 8189 nt | APPRIS ALT2 BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm14073-201 | ENSMUST00000117344 | 381 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm14402-201 | ENSMUST00000122217 | 508 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm25945-201 | ENSMUST00000122484 | 135 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm23331-201 | ENSMUST00000157423 | 108 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm25333-201 | ENSMUST00000158035 | 246 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm26024-201 | ENSMUST00000158657 | 322 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm14435-203 | ENSMUST00000172025 | 192 nt | TSL 5 BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm37923-201 | ENSMUST00000191624 | 161 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Sprr2h-202 | ENSMUST00000191886 | 297 nt | TSL 1 (best) BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm30341-201 | ENSMUST00000194363 | 289 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm43680-201 | ENSMUST00000199466 | 340 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | AC164161.1-201 | ENSMUST00000214076 | 639 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24152-201 | ENSMUST00000082764 | 163 nt | BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm14440-201 | ENSMUST00000098998 | 192 nt | TSL 5 BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Olfr1437-202 | ENSMUST00000207241 | 3751 nt | APPRIS P1 TSL 2 BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm19965-201 | ENSMUST00000179777 | 3030 nt | APPRIS P1 TSL 5 BASIC | 2.74 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Adgrg4-204 | ENSMUST00000153784 | 9329 nt | APPRIS P5 TSL 5 BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm4746-201 | ENSMUST00000120395 | 2406 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Zfp985-201 | ENSMUST00000081742 | 2762 nt | APPRIS P1 TSL 1 (best) BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Olfr339-202 | ENSMUST00000216645 | 4867 nt | APPRIS P1 TSL 3 BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm25875-201 | ENSMUST00000104323 | 107 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Rpl30-ps9-201 | ENSMUST00000122265 | 345 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24358-201 | ENSMUST00000158424 | 288 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm23864-201 | ENSMUST00000177607 | 107 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Mir6386-201 | ENSMUST00000183558 | 104 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm29262-201 | ENSMUST00000190084 | 196 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm37746-201 | ENSMUST00000193249 | 198 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm37754-201 | ENSMUST00000194406 | 452 nt | TSL 5 BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm37089-201 | ENSMUST00000195616 | 129 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm8013-201 | ENSMUST00000200139 | 462 nt | TSL 2 BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm45859-201 | ENSMUST00000212794 | 214 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | AC133517.1-203 | ENSMUST00000225570 | 390 nt | BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Vmn1r19-201 | ENSMUST00000089830 | 2255 nt | APPRIS P1 BASIC | 2.73 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm26473-201 | ENSMUST00000116763 | 127 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm14894-201 | ENSMUST00000117170 | 270 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm15002-201 | ENSMUST00000118406 | 452 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Rps13-ps8-201 | ENSMUST00000118906 | 401 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm15183-201 | ENSMUST00000118933 | 348 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm12934-201 | ENSMUST00000119221 | 343 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm14782-201 | ENSMUST00000120151 | 195 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm25543-201 | ENSMUST00000122678 | 312 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm25392-201 | ENSMUST00000157335 | 297 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24210-201 | ENSMUST00000158263 | 133 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm24056-201 | ENSMUST00000158617 | 146 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Mir6336-201 | ENSMUST00000183581 | 130 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm37449-201 | ENSMUST00000193016 | 270 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm37037-201 | ENSMUST00000194475 | 424 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm18658-201 | ENSMUST00000195558 | 270 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Gm44337-201 | ENSMUST00000196553 | 114 nt | BASIC | 2.72 | □□□□□ -1.97 | | |
| Hoxa11 | P31311 | Mir376a-201 | ENSMUST00000197584 | 68 nt | BASIC | 2.72 | □□□□□ -1.97 | | |