Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24922-201ENSMUST00000158511 102 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Mir5123-201ENSMUST00000177794 83 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Gm25528-201ENSMUST00000180264 132 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Gm28744-201ENSMUST00000189939 340 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Igkv1-108-201ENSMUST00000198926 298 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Mir3073b-201ENSMUST00000199383 60 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Gm43901-201ENSMUST00000203247 453 ntBASIC2.62□□□□□ -1.99
ShhQ62226 AC154271.1-201ENSMUST00000224780 383 ntBASIC2.62□□□□□ -1.99
ShhQ62226 AC122418.1-201ENSMUST00000225012 511 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Gm15302-201ENSMUST00000117779 2630 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Olfr1370-204ENSMUST00000215806 4322 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
ShhQ62226 Gm13219-201ENSMUST00000144870 3019 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
ShhQ62226 Olfr1256-204ENSMUST00000215613 4543 ntAPPRIS P1 TSL 3 BASIC2.61□□□□□ -1.99
ShhQ62226 Vmn1r83-202ENSMUST00000226701 2788 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
ShhQ62226 Gm37061-201ENSMUST00000195066 3243 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Olfr1132-202ENSMUST00000216082 3260 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
ShhQ62226 Olfr1448-202ENSMUST00000213177 3979 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
ShhQ62226 Gm23766-201ENSMUST00000103894 80 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm7209-201ENSMUST00000122339 333 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm27396-201ENSMUST00000157708 58 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm22651-201ENSMUST00000157872 94 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm22527-201ENSMUST00000158816 106 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm22192-201ENSMUST00000175128 85 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm27527-201ENSMUST00000183903 99 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm28900-201ENSMUST00000185232 156 ntBASIC2.61□□□□□ -1.99
ShhQ62226 1700109G14Rik-203ENSMUST00000190737 801 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
ShhQ62226 Gm37007-201ENSMUST00000194234 319 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm43562-201ENSMUST00000196439 238 ntTSL 3 BASIC2.61□□□□□ -1.99
ShhQ62226 Tnfrsf23-203ENSMUST00000208017 544 ntTSL 3 BASIC2.61□□□□□ -1.99
ShhQ62226 Vmn2r-ps50-201ENSMUST00000209317 120 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Olfr6-204ENSMUST00000219365 951 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
ShhQ62226 Serf1-201ENSMUST00000022145 601 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
ShhQ62226 Spata45-201ENSMUST00000077889 432 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
ShhQ62226 mt-Ti-201ENSMUST00000082393 69 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm25632-201ENSMUST00000083112 85 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Gm24698-201ENSMUST00000083883 130 ntBASIC2.61□□□□□ -1.99
ShhQ62226 Vmn1r29-203ENSMUST00000227761 4671 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
ShhQ62226 Vmn1r29-205ENSMUST00000228909 4658 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
ShhQ62226 Olfr772-202ENSMUST00000214672 2955 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
ShhQ62226 Tlr7-201ENSMUST00000060719 3776 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
ShhQ62226 Gm18751-201ENSMUST00000185777 2013 ntBASIC2.6□□□□□ -1.99
ShhQ62226 n-R5s67-201ENSMUST00000104336 114 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Gm12213-201ENSMUST00000119924 353 ntBASIC2.6□□□□□ -1.99
ShhQ62226 B230216N24Rik-202ENSMUST00000159353 345 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
ShhQ62226 Gm22853-201ENSMUST00000174974 131 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Gm25642-201ENSMUST00000175137 66 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Gm20660-201ENSMUST00000177515 289 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Gm27698-201ENSMUST00000184060 249 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Gm36551-201ENSMUST00000196787 300 ntTSL 5 BASIC2.6□□□□□ -1.99
ShhQ62226 Gm25820-202ENSMUST00000197479 128 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Mir376a-201ENSMUST00000197584 68 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Igkv1-115-201ENSMUST00000198714 302 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Gm44429-201ENSMUST00000203542 186 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Vmn1r-ps16-201ENSMUST00000204747 105 ntBASIC2.6□□□□□ -1.99
ShhQ62226 AC125374.2-201ENSMUST00000214278 162 ntBASIC2.6□□□□□ -1.99
ShhQ62226 AC069074.2-201ENSMUST00000217819 428 ntBASIC2.6□□□□□ -1.99
ShhQ62226 AC165157.3-201ENSMUST00000220815 103 ntBASIC2.6□□□□□ -1.99
ShhQ62226 AC159188.1-201ENSMUST00000225198 526 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Gm24356-201ENSMUST00000082859 106 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Gm23377-201ENSMUST00000082943 126 ntBASIC2.6□□□□□ -1.99
ShhQ62226 Olfr152-201ENSMUST00000090709 951 ntAPPRIS P2 BASIC2.6□□□□□ -1.99
ShhQ62226 Vmn1r185-208ENSMUST00000228004 5682 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
ShhQ62226 Olfr811-204ENSMUST00000217571 2399 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
ShhQ62226 Ighv16-1-201ENSMUST00000103470 299 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
ShhQ62226 Gm22658-201ENSMUST00000104196 155 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm23128-201ENSMUST00000104257 132 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm15497-201ENSMUST00000119137 551 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Atp5k-ps2-201ENSMUST00000120437 210 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm24892-201ENSMUST00000122747 104 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm26186-201ENSMUST00000157689 125 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm22382-201ENSMUST00000158185 130 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Mir8103-201ENSMUST00000183945 107 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm27959-201ENSMUST00000185172 111 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm29140-201ENSMUST00000190187 476 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm23128-202ENSMUST00000196578 133 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Igkv4-60-201ENSMUST00000200639 358 ntBASIC2.59□□□□□ -1.99
ShhQ62226 AC171206.2-201ENSMUST00000215252 389 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm31025-201ENSMUST00000222553 482 ntTSL 5 BASIC2.59□□□□□ -1.99
ShhQ62226 Gm46389-201ENSMUST00000223199 392 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Gm23462-201ENSMUST00000083264 104 ntBASIC2.59□□□□□ -1.99
ShhQ62226 Olfr1111-203ENSMUST00000216378 1636 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
ShhQ62226 Olfr1148-202ENSMUST00000215230 3095 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -2
ShhQ62226 Gm4746-201ENSMUST00000120395 2406 ntBASIC2.58□□□□□ -2
ShhQ62226 Stap1-206ENSMUST00000198435 3350 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
ShhQ62226 Gm25529-201ENSMUST00000104850 92 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm14803-201ENSMUST00000117163 361 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm12304-201ENSMUST00000120312 385 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm14770-201ENSMUST00000122197 312 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm26479-201ENSMUST00000122620 106 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm25805-201ENSMUST00000122788 108 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm23589-201ENSMUST00000157660 105 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm27579-201ENSMUST00000158113 63 ntBASIC2.58□□□□□ -2
ShhQ62226 Mup-ps11-201ENSMUST00000178040 545 ntBASIC2.58□□□□□ -2
ShhQ62226 Mup-ps3-201ENSMUST00000178315 545 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm29597-201ENSMUST00000188035 308 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm28849-201ENSMUST00000188127 174 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm28330-201ENSMUST00000190353 171 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm44977-201ENSMUST00000205283 420 ntBASIC2.58□□□□□ -2
ShhQ62226 Klk1b28-ps-201ENSMUST00000206374 217 ntBASIC2.58□□□□□ -2
ShhQ62226 Gm45430-201ENSMUST00000211276 260 ntTSL 5 BASIC2.58□□□□□ -2
Retrieved 100 of 76,532 protein–RNA pairs in 95.6 ms