Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Vmn1r74-202ENSMUST00000228471 6608 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
Rnf40Q3U319 Mecom-203ENSMUST00000108271 3851 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
Rnf40Q3U319 Gm42718-201ENSMUST00000197319 2681 ntBASIC4.24□□□□□ -1.73
Rnf40Q3U319 Gm25323-201ENSMUST00000122555 103 ntBASIC4.24□□□□□ -1.73
Rnf40Q3U319 Gm23098-201ENSMUST00000157552 299 ntBASIC4.24□□□□□ -1.73
Rnf40Q3U319 Mir28b-201ENSMUST00000175399 80 ntBASIC4.24□□□□□ -1.73
Rnf40Q3U319 Gm45052-201ENSMUST00000206457 405 ntTSL 2 BASIC4.24□□□□□ -1.73
Rnf40Q3U319 AC161054.1-201ENSMUST00000214319 184 ntBASIC4.24□□□□□ -1.73
Rnf40Q3U319 AC124524.1-201ENSMUST00000225833 181 ntBASIC4.24□□□□□ -1.73
Rnf40Q3U319 Gm26175-201ENSMUST00000083794 131 ntBASIC4.24□□□□□ -1.73
Rnf40Q3U319 Kctd12b-202ENSMUST00000112572 4851 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
Rnf40Q3U319 Il1rapl1-202ENSMUST00000113964 1936 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
Rnf40Q3U319 Olfr59-204ENSMUST00000214048 3363 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
Rnf40Q3U319 Hfm1-201ENSMUST00000112690 5018 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
Rnf40Q3U319 Arhgap12-205ENSMUST00000182066 4506 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm23654-201ENSMUST00000116758 126 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm23226-201ENSMUST00000116927 103 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm12328-201ENSMUST00000118611 197 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm11982-201ENSMUST00000121480 314 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm23234-201ENSMUST00000157304 134 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm24946-201ENSMUST00000158332 106 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm22840-201ENSMUST00000158444 136 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 BC050972-201ENSMUST00000168475 526 ntTSL 3 BASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm28912-201ENSMUST00000189001 234 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 n-TSaga9-201ENSMUST00000197675 107 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm43001-202ENSMUST00000199076 192 ntTSL 3 BASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm44259-201ENSMUST00000204996 298 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Fxyd1-210ENSMUST00000206012 501 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm19096-201ENSMUST00000209705 766 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm22245-201ENSMUST00000082479 103 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm25589-201ENSMUST00000082502 166 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Gm25581-201ENSMUST00000083410 164 ntBASIC4.23□□□□□ -1.73
Rnf40Q3U319 Ghr-208ENSMUST00000161561 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
Rnf40Q3U319 Vmn2r72-201ENSMUST00000063425 2571 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
Rnf40Q3U319 Depdc1a-201ENSMUST00000029825 2920 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
Rnf40Q3U319 Mkln1-201ENSMUST00000026699 11395 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
Rnf40Q3U319 Gm25091-201ENSMUST00000103997 71 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Gm22193-201ENSMUST00000116868 76 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Gm13274-202ENSMUST00000137624 271 ntTSL 3 BASIC4.22□□□□□ -1.73
Rnf40Q3U319 Gm24846-201ENSMUST00000158033 108 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Gm25491-201ENSMUST00000158733 308 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Gm4468-201ENSMUST00000170206 294 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Scgb2b29-ps-201ENSMUST00000187539 331 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Gm4248-201ENSMUST00000196905 316 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Gm43524-201ENSMUST00000197278 298 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Mir5121-201ENSMUST00000198528 74 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Gm5358-201ENSMUST00000212814 353 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Jakmip1-216ENSMUST00000212997 138 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
Rnf40Q3U319 AC027184.1-201ENSMUST00000226991 424 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Snora31-201ENSMUST00000083213 130 ntBASIC4.22□□□□□ -1.73
Rnf40Q3U319 Olfr1226-202ENSMUST00000214709 5270 ntAPPRIS P1 TSL 3 BASIC4.22□□□□□ -1.73
Rnf40Q3U319 Trdn-208ENSMUST00000219982 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
Rnf40Q3U319 Olfr1450-202ENSMUST00000213587 2872 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
Rnf40Q3U319 Gm45809-201ENSMUST00000211661 3894 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm23256-201ENSMUST00000102235 110 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Trbv16-201ENSMUST00000103274 398 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm26140-201ENSMUST00000103807 110 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm22488-201ENSMUST00000116811 127 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm11874-201ENSMUST00000117437 130 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm11640-201ENSMUST00000155987 272 ntTSL 3 BASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm24837-201ENSMUST00000158683 81 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm24739-201ENSMUST00000158855 292 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm22908-201ENSMUST00000177620 110 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm21798-201ENSMUST00000180105 261 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
Rnf40Q3U319 AC126672.1-201ENSMUST00000217096 396 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Mir7-1-201ENSMUST00000083500 108 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm22354-201ENSMUST00000083919 70 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 n-R5s151-201ENSMUST00000083959 119 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Gm42993-201ENSMUST00000196856 7325 ntBASIC4.21□□□□□ -1.74
Rnf40Q3U319 Olfr1009-203ENSMUST00000216443 4047 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
Rnf40Q3U319 Zfp40-203ENSMUST00000140313 2754 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
Rnf40Q3U319 Vmn2r59-201ENSMUST00000168489 2598 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
Rnf40Q3U319 AC121997.2-203ENSMUST00000228613 4192 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Olfr215-201ENSMUST00000061723 4112 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
Rnf40Q3U319 Gm8244-201ENSMUST00000121254 264 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Tarbp2-207ENSMUST00000142114 420 ntTSL 5 BASIC4.2□□□□□ -1.74
Rnf40Q3U319 Gm25665-201ENSMUST00000157695 110 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Mir1947-201ENSMUST00000158235 85 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Gm25605-201ENSMUST00000158364 124 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Mir7022-201ENSMUST00000183749 61 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Mir7667-201ENSMUST00000183866 63 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Rpl18a-205ENSMUST00000212494 473 ntTSL 5 BASIC4.2□□□□□ -1.74
Rnf40Q3U319 AC133517.1-203ENSMUST00000225570 390 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Gm10025-201ENSMUST00000079568 372 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Gm25856-201ENSMUST00000082786 75 ntBASIC4.2□□□□□ -1.74
Rnf40Q3U319 Olfr1183-203ENSMUST00000219871 8353 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
Rnf40Q3U319 Gm32647-201ENSMUST00000206116 3288 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
Rnf40Q3U319 AC123035.1-201ENSMUST00000213846 2671 ntTSL 5 BASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm22196-201ENSMUST00000116865 109 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm12458-201ENSMUST00000119387 495 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm13588-201ENSMUST00000120026 135 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm22988-201ENSMUST00000122759 144 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm24061-201ENSMUST00000157489 120 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm23859-201ENSMUST00000158383 64 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm22135-201ENSMUST00000158752 108 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm8034-201ENSMUST00000178853 132 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm42739-201ENSMUST00000200687 226 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Gm44887-201ENSMUST00000208980 178 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 AL590503.1-201ENSMUST00000222053 321 ntBASIC4.19□□□□□ -1.74
Rnf40Q3U319 Olfr794-202ENSMUST00000204820 3044 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
Retrieved 100 of 76,532 protein–RNA pairs in 83.3 ms