Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm22169-201ENSMUST00000083229 107 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Vmn1r67-202ENSMUST00000226237 2352 ntAPPRIS ALT2 BASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 C87977-201ENSMUST00000105753 2446 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Mir693-201ENSMUST00000102187 89 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Mir878-201ENSMUST00000104680 78 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm14448-201ENSMUST00000116383 210 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm15002-201ENSMUST00000118406 452 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm5937-201ENSMUST00000119715 643 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm11240-201ENSMUST00000142047 751 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm23048-201ENSMUST00000157237 129 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm8292-201ENSMUST00000162574 396 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm23355-201ENSMUST00000177614 107 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm25450-201ENSMUST00000179144 107 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm23148-201ENSMUST00000180367 107 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Mir7226-201ENSMUST00000184953 60 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Ska2l-ps-201ENSMUST00000186208 360 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm29140-201ENSMUST00000190187 476 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm44477-201ENSMUST00000199661 110 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 AC125374.2-201ENSMUST00000214278 162 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 AC158606.1-201ENSMUST00000220078 325 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 AC173482.4-201ENSMUST00000225096 348 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Olfr1009-201ENSMUST00000055517 945 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 mt-Ti-201ENSMUST00000082393 69 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Gm25258-201ENSMUST00000083049 107 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Mir133a-1-201ENSMUST00000083465 68 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Mir32-201ENSMUST00000083610 70 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Olfr835-202ENSMUST00000213018 2690 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 AC164297.1-201ENSMUST00000224484 1561 ntBASIC3.37□□□□□ -1.87
Ddb1Q3U1J4 Olfr1129-203ENSMUST00000214773 2403 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Cylc1-201ENSMUST00000101282 1923 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Ighv3-1-201ENSMUST00000103478 350 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Gm15526-201ENSMUST00000112504 204 ntBASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Gm15205-201ENSMUST00000129329 632 ntTSL 5 BASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Mir6481-201ENSMUST00000184617 110 ntBASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Gm28744-201ENSMUST00000189939 340 ntBASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Gm42716-203ENSMUST00000197140 259 ntTSL 3 BASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Vmn1r-ps6-202ENSMUST00000202526 135 ntTSL 5 BASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Gm26497-201ENSMUST00000083146 107 ntBASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 Olfr1258-201ENSMUST00000102609 7007 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 AC102369.2-201ENSMUST00000219725 1679 ntBASIC3.36□□□□□ -1.87
Ddb1Q3U1J4 4930524B17Rik-201ENSMUST00000200755 1870 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Mir465b-1-201ENSMUST00000103940 79 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Mir465b-2-201ENSMUST00000104662 79 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Gm11572-201ENSMUST00000119164 120 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Gm13433-201ENSMUST00000121701 240 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Gm24909-201ENSMUST00000157290 280 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Gm24716-201ENSMUST00000157524 104 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Gm28710-201ENSMUST00000186866 489 ntTSL 5 BASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Gm45687-201ENSMUST00000209454 155 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 AC155712.1-201ENSMUST00000219704 160 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 AC161758.2-201ENSMUST00000228513 218 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Olfr470-201ENSMUST00000073059 945 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Gm23731-201ENSMUST00000083749 107 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Pcdh11x-206ENSMUST00000192677 9097 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Mroh9-201ENSMUST00000096608 2956 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Gm10033-201ENSMUST00000072427 1813 ntBASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Olfr24-203ENSMUST00000216754 4327 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
Ddb1Q3U1J4 Vmn1r185-211ENSMUST00000228467 6915 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Samd9l-201ENSMUST00000120087 5330 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm14894-201ENSMUST00000117170 270 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm14402-201ENSMUST00000122217 508 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm12443-201ENSMUST00000122308 323 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm23230-201ENSMUST00000157298 133 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm24308-201ENSMUST00000177773 114 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm24799-201ENSMUST00000178431 79 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm20058-201ENSMUST00000186939 284 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm37449-201ENSMUST00000193016 270 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm18658-201ENSMUST00000195558 270 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Mir6925-201ENSMUST00000197857 70 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Igkv4-60-201ENSMUST00000200639 358 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm45150-201ENSMUST00000206051 467 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 AC145736.2-201ENSMUST00000216305 365 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 AC122367.2-201ENSMUST00000220987 534 ntTSL 2 BASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 AC129017.1-201ENSMUST00000228363 270 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm25078-201ENSMUST00000082530 107 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Gm25130-201ENSMUST00000082650 156 ntBASIC3.34□□□□□ -1.87
Ddb1Q3U1J4 Zfp988-201ENSMUST00000148762 2800 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
Ddb1Q3U1J4 Olfr509-203ENSMUST00000214861 3535 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Gm22752-201ENSMUST00000102083 109 ntBASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Gm24601-201ENSMUST00000157970 143 ntBASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Gm16117-201ENSMUST00000160544 324 ntTSL 5 BASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Gm27796-201ENSMUST00000183863 261 ntBASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Gm28848-201ENSMUST00000189984 168 ntBASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Mir3535-201ENSMUST00000197651 147 ntBASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Igkv15-102-201ENSMUST00000197885 287 ntBASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Gm43978-201ENSMUST00000203491 451 ntBASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Gm10542-201ENSMUST00000097586 273 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Olfr849-202ENSMUST00000217273 6140 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Olfr1111-203ENSMUST00000216378 1636 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
Ddb1Q3U1J4 Gm43753-201ENSMUST00000196539 3309 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Olfr201-202ENSMUST00000216834 3706 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Wnk3-201ENSMUST00000096285 8551 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Gm24079-201ENSMUST00000104352 132 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Snord72-201ENSMUST00000104549 81 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Gm9009-201ENSMUST00000117321 326 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Gm11460-201ENSMUST00000118200 361 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Gm11712-201ENSMUST00000129139 367 ntTSL 5 BASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Gm24726-201ENSMUST00000158232 121 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Mir6402-201ENSMUST00000183406 80 ntBASIC3.32□□□□□ -1.88
Ddb1Q3U1J4 Mir7667-201ENSMUST00000183866 63 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 76,532 protein–RNA pairs in 138.6 ms