Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 AC164161.1-201ENSMUST00000214076 639 ntBASIC2.67□□□□□ -1.98
ShhQ62226 AC168266.1-201ENSMUST00000216024 226 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Olfr1009-201ENSMUST00000055517 945 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
ShhQ62226 Gm24152-201ENSMUST00000082764 163 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Rny1-201ENSMUST00000083767 112 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Fam81b-201ENSMUST00000208418 2760 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
ShhQ62226 Olfr1228-202ENSMUST00000215447 3223 ntAPPRIS ALT2 TSL 2 BASIC2.66□□□□□ -1.98
ShhQ62226 Olfr1454-202ENSMUST00000213806 3906 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
ShhQ62226 Zbtb37-203ENSMUST00000162226 18814 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
ShhQ62226 Gm15010-201ENSMUST00000117153 407 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm14894-201ENSMUST00000117170 270 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm13714-201ENSMUST00000117313 221 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm13880-201ENSMUST00000118421 474 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm13210-201ENSMUST00000121483 273 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm15065-201ENSMUST00000121699 273 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm22316-201ENSMUST00000158012 216 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm22858-201ENSMUST00000174972 76 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm27796-201ENSMUST00000183863 261 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm29242-201ENSMUST00000186570 457 ntTSL 5 BASIC2.66□□□□□ -1.98
ShhQ62226 Gm37449-201ENSMUST00000193016 270 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm37586-201ENSMUST00000193654 204 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm18658-201ENSMUST00000195558 270 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Mir3068-202ENSMUST00000197755 79 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm45013-201ENSMUST00000206883 178 ntBASIC2.66□□□□□ -1.98
ShhQ62226 AC167721.1-201ENSMUST00000217088 279 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Gm19563-201ENSMUST00000222031 270 ntBASIC2.66□□□□□ -1.98
ShhQ62226 AC100209.2-201ENSMUST00000224461 451 ntBASIC2.66□□□□□ -1.98
ShhQ62226 AC129017.1-201ENSMUST00000228363 270 ntBASIC2.66□□□□□ -1.98
ShhQ62226 Skint2-203ENSMUST00000106560 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
ShhQ62226 Gpr22-201ENSMUST00000057783 4587 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
ShhQ62226 Olfr1161-202ENSMUST00000214438 3675 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.98
ShhQ62226 Gm38382-201ENSMUST00000193790 2499 ntBASIC2.65□□□□□ -1.98
ShhQ62226 Olfr1245-202ENSMUST00000217402 2610 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.98
ShhQ62226 AC152159.1-201ENSMUST00000226719 2769 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm15102-201ENSMUST00000118740 1502 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm15282-201ENSMUST00000117707 300 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm14782-201ENSMUST00000120151 195 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm13992-201ENSMUST00000120558 156 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm13569-201ENSMUST00000137221 574 ntTSL 3 BASIC2.65□□□□□ -1.99
ShhQ62226 Gm25280-201ENSMUST00000157269 101 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm24908-201ENSMUST00000157294 127 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm22227-201ENSMUST00000157356 259 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm24846-201ENSMUST00000158033 108 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Ighv1-78-201ENSMUST00000163670 294 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
ShhQ62226 AC154297.1-201ENSMUST00000171334 397 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm29658-201ENSMUST00000185404 230 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm29155-202ENSMUST00000186289 216 ntTSL 5 BASIC2.65□□□□□ -1.99
ShhQ62226 Tmem167-ps2-201ENSMUST00000190251 214 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Igkv5-40-1-201ENSMUST00000196457 359 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Mir378a-201ENSMUST00000198300 66 ntBASIC2.65□□□□□ -1.99
ShhQ62226 Gm34314-201ENSMUST00000203622 367 ntBASIC2.65□□□□□ -1.99
ShhQ62226 4930567K20Rik-204ENSMUST00000220270 445 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
ShhQ62226 AC173482.4-201ENSMUST00000225096 348 ntBASIC2.65□□□□□ -1.99
ShhQ62226 1700010L04Rik-201ENSMUST00000032872 330 ntTSL 5 BASIC2.65□□□□□ -1.99
ShhQ62226 Vmn1r211-202ENSMUST00000228645 5447 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
ShhQ62226 Vmn1r185-211ENSMUST00000228467 6915 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
ShhQ62226 Gm24582-201ENSMUST00000103967 103 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Gm23911-201ENSMUST00000104596 134 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Mir872-201ENSMUST00000104728 81 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Gm14073-201ENSMUST00000117344 381 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Gm15211-201ENSMUST00000118932 528 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Gm13200-201ENSMUST00000138802 258 ntTSL 3 BASIC2.64□□□□□ -1.99
ShhQ62226 Gm27402-201ENSMUST00000183890 120 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Gm27582-201ENSMUST00000184084 126 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Snhg14-203ENSMUST00000185815 670 ntTSL 5 BASIC2.64□□□□□ -1.99
ShhQ62226 Gm28710-201ENSMUST00000186866 489 ntTSL 5 BASIC2.64□□□□□ -1.99
ShhQ62226 Rgs1-208ENSMUST00000189061 3841 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
ShhQ62226 Gm37763-201ENSMUST00000193445 120 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Gm42739-201ENSMUST00000200687 226 ntBASIC2.64□□□□□ -1.99
ShhQ62226 D730003K21Rik-201ENSMUST00000215052 589 ntTSL 2 BASIC2.64□□□□□ -1.99
ShhQ62226 Gm23738-201ENSMUST00000082828 171 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Gm23247-201ENSMUST00000083373 107 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Mir125b-2-201ENSMUST00000083538 71 ntBASIC2.64□□□□□ -1.99
ShhQ62226 Olfr1135-202ENSMUST00000213835 2648 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
ShhQ62226 Gm5141-202ENSMUST00000201047 3279 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
ShhQ62226 Olfr611-202ENSMUST00000216074 2301 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
ShhQ62226 Gm25466-201ENSMUST00000103995 132 ntBASIC2.63□□□□□ -1.99
ShhQ62226 Gm22270-201ENSMUST00000104034 132 ntBASIC2.63□□□□□ -1.99
ShhQ62226 Gm14774-201ENSMUST00000117857 536 ntBASIC2.63□□□□□ -1.99
ShhQ62226 Gm15002-201ENSMUST00000118406 452 ntBASIC2.63□□□□□ -1.99
ShhQ62226 Gm23325-201ENSMUST00000157422 129 ntBASIC2.63□□□□□ -1.99
ShhQ62226 Gm17166-201ENSMUST00000172006 431 ntBASIC2.63□□□□□ -1.99
ShhQ62226 Gm21893-201ENSMUST00000179119 397 ntBASIC2.63□□□□□ -1.99
ShhQ62226 Gm2719-201ENSMUST00000191929 444 ntBASIC2.63□□□□□ -1.99
ShhQ62226 Gm7065-201ENSMUST00000222150 474 ntBASIC2.63□□□□□ -1.99
ShhQ62226 4930520P13Rik-201ENSMUST00000222622 505 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
ShhQ62226 Olfr1317-201ENSMUST00000060098 951 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
ShhQ62226 Olfr898-203ENSMUST00000217063 4169 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
ShhQ62226 Il23r-201ENSMUST00000118364 2488 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
ShhQ62226 Gm19965-201ENSMUST00000179777 3030 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
ShhQ62226 Skint5-203ENSMUST00000170105 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
ShhQ62226 Gm23202-201ENSMUST00000104376 129 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Mdga2-203ENSMUST00000113942 423 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Gm26247-201ENSMUST00000116702 91 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Mir467g-201ENSMUST00000116906 120 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Gm15215-201ENSMUST00000117773 489 ntBASIC2.62□□□□□ -1.99
ShhQ62226 Gm12162-202ENSMUST00000129432 127 ntTSL 5 BASIC2.62□□□□□ -1.99
ShhQ62226 Nell1os-202ENSMUST00000136672 491 ntTSL 5 BASIC2.62□□□□□ -1.99
ShhQ62226 Gm13976-201ENSMUST00000154367 479 ntTSL 3 BASIC2.62□□□□□ -1.99
ShhQ62226 Gm25454-201ENSMUST00000157947 315 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 76,532 protein–RNA pairs in 83.7 ms