| Hes3 | Q61657 | Gm25269-201 | ENSMUST00000122601 | 104 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm45886-201 | ENSMUST00000148141 | 342 nt | TSL 5 BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm15485-201 | ENSMUST00000149095 | 258 nt | TSL 3 BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm24915-201 | ENSMUST00000157288 | 78 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm22817-201 | ENSMUST00000157448 | 356 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm24777-201 | ENSMUST00000157644 | 107 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm23120-201 | ENSMUST00000157654 | 287 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm23854-201 | ENSMUST00000158378 | 108 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm22944-201 | ENSMUST00000158662 | 133 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm20689-201 | ENSMUST00000176033 | 279 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Esp16-201 | ENSMUST00000178037 | 1243 nt | APPRIS P1 TSL 1 (best) BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm23267-201 | ENSMUST00000178490 | 132 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm21894-201 | ENSMUST00000179631 | 546 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Snord116l12-201 | ENSMUST00000179816 | 94 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm26936-201 | ENSMUST00000182424 | 382 nt | TSL 1 (best) BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm26979-201 | ENSMUST00000182971 | 217 nt | TSL 3 BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm28995-201 | ENSMUST00000186625 | 261 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | C230029F24Rik-202 | ENSMUST00000188673 | 554 nt | TSL 1 (best) BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | 6430573P05Rik-201 | ENSMUST00000192562 | 508 nt | TSL 5 BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm44336-201 | ENSMUST00000203696 | 468 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm44870-201 | ENSMUST00000207291 | 357 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm45375-201 | ENSMUST00000210338 | 280 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | AC126939.3-201 | ENSMUST00000226061 | 166 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | AC164304.1-201 | ENSMUST00000226920 | 272 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm10092-201 | ENSMUST00000077110 | 180 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm22972-201 | ENSMUST00000083297 | 131 nt | BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Defb41-201 | ENSMUST00000088463 | 467 nt | TSL 1 (best) BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Vmn1r75-204 | ENSMUST00000227611 | 4336 nt | APPRIS ALT2 BASIC | 0.83 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Mir374b-201 | ENSMUST00000102314 | 95 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Traj52-201 | ENSMUST00000103691 | 66 nt | APPRIS P1 BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm13672-201 | ENSMUST00000117554 | 459 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm12639-201 | ENSMUST00000121400 | 493 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm12779-201 | ENSMUST00000121496 | 143 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm24632-201 | ENSMUST00000122770 | 323 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm26150-201 | ENSMUST00000157426 | 151 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm9593-201 | ENSMUST00000166034 | 469 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Traj60-201 | ENSMUST00000167781 | 54 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm22851-201 | ENSMUST00000178741 | 94 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm25074-201 | ENSMUST00000178782 | 94 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Ranbp2-ps3-201 | ENSMUST00000183549 | 388 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Olfr795-ps1-201 | ENSMUST00000205245 | 763 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm39473-201 | ENSMUST00000223498 | 522 nt | TSL 3 BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | n-R5s37-201 | ENSMUST00000082533 | 118 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm25636-201 | ENSMUST00000082666 | 133 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm25404-201 | ENSMUST00000082970 | 107 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm23453-201 | ENSMUST00000083326 | 106 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm23245-201 | ENSMUST00000083370 | 135 nt | BASIC | 0.82 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Sval2-203 | ENSMUST00000120605 | 497 nt | TSL 2 BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm22027-201 | ENSMUST00000122737 | 127 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm22221-201 | ENSMUST00000157362 | 103 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm25384-201 | ENSMUST00000157807 | 105 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm23317-201 | ENSMUST00000157999 | 129 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm24768-201 | ENSMUST00000158512 | 94 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Olfr1366-201 | ENSMUST00000168629 | 1054 nt | APPRIS ALT2 BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Vmn1r-ps59-201 | ENSMUST00000172698 | 199 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Mir7675-201 | ENSMUST00000184262 | 58 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Mir7665-201 | ENSMUST00000184907 | 63 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm29613-201 | ENSMUST00000185846 | 313 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm28917-201 | ENSMUST00000187294 | 237 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm28474-201 | ENSMUST00000188501 | 315 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm29544-201 | ENSMUST00000188860 | 313 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm28808-201 | ENSMUST00000190978 | 313 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm28766-201 | ENSMUST00000191086 | 234 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Topbp1-ps2-201 | ENSMUST00000191289 | 189 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm42570-201 | ENSMUST00000195937 | 292 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | 4930459L07Rik-201 | ENSMUST00000199751 | 420 nt | TSL 1 (best) BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm2628-201 | ENSMUST00000218019 | 426 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Olfr1366-204 | ENSMUST00000218154 | 1054 nt | APPRIS P2 BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | AC138290.2-201 | ENSMUST00000218822 | 369 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm40810-201 | ENSMUST00000219149 | 253 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | AC129202.1-201 | ENSMUST00000224895 | 526 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Stfa3-201 | ENSMUST00000068182 | 412 nt | APPRIS P1 TSL 1 (best) BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Snord118-201 | ENSMUST00000082965 | 135 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Mir221-201 | ENSMUST00000083488 | 95 nt | BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm10720-201 | ENSMUST00000099050 | 669 nt | APPRIS P1 TSL 5 BASIC | 0.81 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm14937-201 | ENSMUST00000119709 | 208 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Defa-ps8-201 | ENSMUST00000120972 | 279 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm15214-201 | ENSMUST00000122155 | 470 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm24517-201 | ENSMUST00000122560 | 107 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm23656-201 | ENSMUST00000122626 | 112 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm23000-201 | ENSMUST00000157083 | 139 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Mir8119-201 | ENSMUST00000183371 | 129 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm27326-201 | ENSMUST00000183504 | 95 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm5269-201 | ENSMUST00000183590 | 138 nt | APPRIS P1 BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm27490-201 | ENSMUST00000184754 | 128 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | 1700031L13Rik-204 | ENSMUST00000188072 | 812 nt | TSL 5 BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm29591-201 | ENSMUST00000188215 | 357 nt | TSL 5 BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm28438-201 | ENSMUST00000188299 | 345 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm9156-201 | ENSMUST00000189660 | 463 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | 1700019A02Rik-202 | ENSMUST00000190748 | 726 nt | APPRIS ALT2 TSL 3 BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm37438-201 | ENSMUST00000192813 | 393 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm36992-201 | ENSMUST00000195463 | 428 nt | TSL 3 BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Mir6962-201 | ENSMUST00000199512 | 63 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm44449-201 | ENSMUST00000203610 | 153 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | AC116589.7-201 | ENSMUST00000221061 | 239 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | AC156560.1-201 | ENSMUST00000221425 | 256 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm19441-201 | ENSMUST00000221545 | 330 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | AC164117.1-201 | ENSMUST00000221726 | 239 nt | BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | Gm34408-201 | ENSMUST00000222104 | 655 nt | TSL 5 BASIC | 0.8 | □□□□□ -2.28 | | |
| Hes3 | Q61657 | AC156790.3-201 | ENSMUST00000226200 | 254 nt | BASIC | 0.8 | □□□□□ -2.28 | | |