Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm22382-201ENSMUST00000158185 130 ntBASIC4.29□□□□□ -1.72
Rnf40Q3U319 Gm16289-201ENSMUST00000162079 183 ntBASIC4.29□□□□□ -1.72
Rnf40Q3U319 Gm26460-201ENSMUST00000175061 126 ntBASIC4.29□□□□□ -1.72
Rnf40Q3U319 Mir5136-201ENSMUST00000175573 76 ntBASIC4.29□□□□□ -1.72
Rnf40Q3U319 Gm44343-201ENSMUST00000196702 90 ntBASIC4.29□□□□□ -1.72
Rnf40Q3U319 Gm25800-201ENSMUST00000082636 134 ntBASIC4.29□□□□□ -1.72
Rnf40Q3U319 Glra2-201ENSMUST00000058787 3150 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
Rnf40Q3U319 Zfp788-207ENSMUST00000170770 2499 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
Rnf40Q3U319 Vmn1r82-201ENSMUST00000072801 4784 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
Rnf40Q3U319 Gm13630-201ENSMUST00000127849 3650 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
Rnf40Q3U319 Olfr1507-203ENSMUST00000206062 2803 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
Rnf40Q3U319 Ccr1-201ENSMUST00000026911 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
Rnf40Q3U319 Nlrp14-201ENSMUST00000084763 3272 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
Rnf40Q3U319 Gm6377-201ENSMUST00000060013 2793 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
Rnf40Q3U319 Tsga10-204ENSMUST00000123082 3953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
Rnf40Q3U319 Gm24117-201ENSMUST00000103973 133 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 Gm24469-201ENSMUST00000104487 131 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 Mir466l-201ENSMUST00000104866 121 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 Gm14568-201ENSMUST00000119321 294 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 Gm26253-201ENSMUST00000122493 103 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 AC154297.1-201ENSMUST00000171334 397 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 Trav7-5-201ENSMUST00000200609 337 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
Rnf40Q3U319 AC153526.4-201ENSMUST00000217713 379 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 CT033785.1-201ENSMUST00000224872 272 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 Gm9911-201ENSMUST00000211467 2802 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 Olfr714-203ENSMUST00000214429 4324 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
Rnf40Q3U319 Gm42909-201ENSMUST00000196982 3619 ntBASIC4.28□□□□□ -1.72
Rnf40Q3U319 Olfr548-ps1-202ENSMUST00000210064 4287 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
Rnf40Q3U319 Tlr7-203ENSMUST00000112164 3468 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
Rnf40Q3U319 Nlrp4c-201ENSMUST00000037728 3615 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
Rnf40Q3U319 Olfr769-203ENSMUST00000216906 4325 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
Rnf40Q3U319 Gm18795-201ENSMUST00000222371 3266 ntTSL 5 BASIC4.27□□□□□ -1.73
Rnf40Q3U319 Gm25096-201ENSMUST00000104043 129 ntBASIC4.27□□□□□ -1.73
Rnf40Q3U319 Gm13478-201ENSMUST00000118312 413 ntBASIC4.27□□□□□ -1.73
Rnf40Q3U319 Gm24246-201ENSMUST00000157315 132 ntBASIC4.27□□□□□ -1.73
Rnf40Q3U319 Gm27690-201ENSMUST00000184596 126 ntBASIC4.27□□□□□ -1.73
Rnf40Q3U319 1700016B01Rik-201ENSMUST00000197688 270 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
Rnf40Q3U319 Tenm1-202ENSMUST00000115058 12837 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
Rnf40Q3U319 Gm11251-201ENSMUST00000119593 2800 ntBASIC4.27□□□□□ -1.73
Rnf40Q3U319 Rbbp8-202ENSMUST00000115861 3523 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
Rnf40Q3U319 AC126673.1-201ENSMUST00000223208 3856 ntBASIC4.27□□□□□ -1.73
Rnf40Q3U319 Olfr1153-202ENSMUST00000217436 2144 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
Rnf40Q3U319 Zfp981-201ENSMUST00000105735 3038 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
Rnf40Q3U319 AC124572.2-201ENSMUST00000218041 5152 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm7470-201ENSMUST00000194219 2095 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Eda2r-201ENSMUST00000037353 4752 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm4736-201ENSMUST00000100870 380 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Snora64-201ENSMUST00000104521 134 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm14401-201ENSMUST00000108968 247 ntTSL 5 BASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm23788-201ENSMUST00000122535 106 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm25828-201ENSMUST00000157087 95 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm23753-201ENSMUST00000157575 149 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm25264-201ENSMUST00000158519 117 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm17416-201ENSMUST00000163724 201 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm27940-201ENSMUST00000184449 98 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm23925-202ENSMUST00000188429 132 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 AC122194.1-201ENSMUST00000220549 293 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Gm22507-201ENSMUST00000082773 160 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Mir137-201ENSMUST00000083635 73 ntBASIC4.26□□□□□ -1.73
Rnf40Q3U319 Vmn2r27-201ENSMUST00000100968 2574 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
Rnf40Q3U319 Olfr1463-202ENSMUST00000207246 2315 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
Rnf40Q3U319 Usp34-208ENSMUST00000180046 12200 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
Rnf40Q3U319 Macc1-204ENSMUST00000222058 4193 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
Rnf40Q3U319 AC158605.2-201ENSMUST00000220287 2726 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
Rnf40Q3U319 Olfr1151-202ENSMUST00000217376 2866 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
Rnf40Q3U319 Olfr715-202ENSMUST00000214919 5114 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
Rnf40Q3U319 Olfr437-202ENSMUST00000205175 2952 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm22020-201ENSMUST00000104358 136 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Rps15a-ps7-201ENSMUST00000117430 392 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm15069-201ENSMUST00000117792 192 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm6071-201ENSMUST00000119561 440 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm15068-201ENSMUST00000119796 192 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm11281-201ENSMUST00000141391 576 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm25625-201ENSMUST00000157221 96 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm26153-201ENSMUST00000157433 127 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm23253-201ENSMUST00000157441 104 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm24930-201ENSMUST00000158315 83 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm25369-201ENSMUST00000158848 132 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm23638-201ENSMUST00000175073 126 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm23158-201ENSMUST00000175076 126 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm22907-201ENSMUST00000175198 126 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm22625-201ENSMUST00000175382 126 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm22875-201ENSMUST00000175449 126 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm25197-201ENSMUST00000175516 126 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm27857-201ENSMUST00000176930 126 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm26268-201ENSMUST00000177685 126 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm23681-201ENSMUST00000178821 126 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm27580-201ENSMUST00000183666 149 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm27869-201ENSMUST00000184327 122 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm28612-201ENSMUST00000189214 416 ntTSL 5 BASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm28169-201ENSMUST00000190342 345 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Olfr439-ps1-201ENSMUST00000204679 307 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Rps26-ps1-202ENSMUST00000212102 351 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 4930567H12Rik-204ENSMUST00000213085 801 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
Rnf40Q3U319 Olfr1186-202ENSMUST00000215912 1850 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
Rnf40Q3U319 AC174459.2-201ENSMUST00000226036 160 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Srek1-204ENSMUST00000210489 6330 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
Rnf40Q3U319 Gm38031-201ENSMUST00000191819 3015 ntBASIC4.25□□□□□ -1.73
Rnf40Q3U319 Vmn1r219-204ENSMUST00000228113 5639 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
Rnf40Q3U319 Psmc6-201ENSMUST00000022380 2234 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
Retrieved 100 of 76,532 protein–RNA pairs in 80.2 ms