Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm27786-201ENSMUST00000184337 70 ntBASIC3.43□□□□□ -1.86
Ddb1Q3U1J4 Gm8739-201ENSMUST00000185962 181 ntTSL 5 BASIC3.43□□□□□ -1.86
Ddb1Q3U1J4 Gm29242-201ENSMUST00000186570 457 ntTSL 5 BASIC3.43□□□□□ -1.86
Ddb1Q3U1J4 Gm43250-201ENSMUST00000196536 273 ntBASIC3.43□□□□□ -1.86
Ddb1Q3U1J4 Gm8013-201ENSMUST00000200139 462 ntTSL 2 BASIC3.43□□□□□ -1.86
Ddb1Q3U1J4 AC093316.2-201ENSMUST00000220015 172 ntTSL 5 BASIC3.43□□□□□ -1.86
Ddb1Q3U1J4 Rny1-201ENSMUST00000083767 112 ntBASIC3.43□□□□□ -1.86
Ddb1Q3U1J4 Olfr896-ps1-202ENSMUST00000215219 2878 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
Ddb1Q3U1J4 Olfr104-ps-202ENSMUST00000215398 2771 ntAPPRIS P5 TSL 5 BASIC3.43□□□□□ -1.86
Ddb1Q3U1J4 1700006A11Rik-201ENSMUST00000029598 2161 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
Ddb1Q3U1J4 AC152159.1-201ENSMUST00000226719 2769 ntBASIC3.42□□□□□ -1.86
Ddb1Q3U1J4 Gm13967-201ENSMUST00000120404 380 ntBASIC3.42□□□□□ -1.86
Ddb1Q3U1J4 Gm23232-201ENSMUST00000157300 105 ntBASIC3.42□□□□□ -1.86
Ddb1Q3U1J4 Gm42570-201ENSMUST00000195937 292 ntBASIC3.42□□□□□ -1.86
Ddb1Q3U1J4 Gm45365-201ENSMUST00000209489 256 ntBASIC3.42□□□□□ -1.86
Ddb1Q3U1J4 Gm23723-201ENSMUST00000082996 132 ntBASIC3.42□□□□□ -1.86
Ddb1Q3U1J4 Gm26327-201ENSMUST00000093724 111 ntBASIC3.42□□□□□ -1.86
Ddb1Q3U1J4 Defa25-201ENSMUST00000095425 279 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
Ddb1Q3U1J4 Olfr1354-202ENSMUST00000204587 3781 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Vmn1r185-206ENSMUST00000227479 6525 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Olfr165-202ENSMUST00000206110 1862 ntAPPRIS ALT1 TSL 3 BASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm45662-201ENSMUST00000210054 2098 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 AC125223.3-201ENSMUST00000223588 2067 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm14971-201ENSMUST00000117980 663 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm15183-201ENSMUST00000118933 348 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm11356-201ENSMUST00000118974 192 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm12213-201ENSMUST00000119924 353 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm13656-201ENSMUST00000123829 345 ntTSL 3 BASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm15561-201ENSMUST00000124326 540 ntTSL 3 BASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm25333-201ENSMUST00000158035 246 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Vmn1r-ps83-201ENSMUST00000172677 705 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm27399-201ENSMUST00000184250 78 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm5329-201ENSMUST00000186898 463 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm37923-201ENSMUST00000191624 161 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Gm37746-201ENSMUST00000193249 198 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 AC155715.1-201ENSMUST00000213575 463 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 AC165157.3-201ENSMUST00000220815 103 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 CT030166.2-201ENSMUST00000222021 368 ntBASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Olfr110-201ENSMUST00000168318 1639 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
Ddb1Q3U1J4 Dpp10-201ENSMUST00000112603 4477 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
Ddb1Q3U1J4 Olfr1229-202ENSMUST00000213883 3594 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
Ddb1Q3U1J4 Rpl31-ps22-201ENSMUST00000117961 337 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm13729-201ENSMUST00000120328 406 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm24629-201ENSMUST00000122762 89 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm25718-201ENSMUST00000158632 118 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm24348-201ENSMUST00000158710 130 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm15562-201ENSMUST00000161397 426 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm24082-201ENSMUST00000175175 83 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Mir3106-201ENSMUST00000175401 82 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Mir6370-201ENSMUST00000183510 120 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm27747-201ENSMUST00000184707 85 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm37007-201ENSMUST00000194234 319 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm38060-201ENSMUST00000194822 464 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Olfr6-204ENSMUST00000219365 951 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 AC159632.1-201ENSMUST00000221808 317 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 AC135292.1-201ENSMUST00000227665 204 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm23453-201ENSMUST00000083326 106 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Gm25651-201ENSMUST00000083782 119 ntBASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Olfr1457-204ENSMUST00000215229 2538 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Cyp3a41a-201ENSMUST00000094111 2060 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Olfr1181-203ENSMUST00000213190 3934 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Skint6-202ENSMUST00000171224 3723 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
Ddb1Q3U1J4 Zfp711-201ENSMUST00000071814 3817 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Trdj2-201ENSMUST00000103683 59 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm23836-201ENSMUST00000104434 129 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Zfp990-202ENSMUST00000105742 2996 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm14792-201ENSMUST00000119725 258 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm13210-201ENSMUST00000121483 273 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm15065-201ENSMUST00000121699 273 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 n-R5s87-201ENSMUST00000122752 116 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm14773-201ENSMUST00000125932 451 ntTSL 2 BASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm5168-202ENSMUST00000168002 636 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm22264-201ENSMUST00000178200 107 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm25939-201ENSMUST00000179876 191 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm37281-201ENSMUST00000192412 439 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm44337-201ENSMUST00000196553 114 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm43680-201ENSMUST00000199466 340 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm45879-201ENSMUST00000212521 392 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 CT025619.4-201ENSMUST00000217362 350 ntTSL 2 BASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm23847-201ENSMUST00000083829 110 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Zfp984-201ENSMUST00000105734 2729 ntAPPRIS P1 TSL 3 BASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 CT025538.3-201ENSMUST00000225279 3848 ntBASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Vmn1r19-201ENSMUST00000089830 2255 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
Ddb1Q3U1J4 Gm24683-201ENSMUST00000104840 88 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm27723-201ENSMUST00000157398 63 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm23331-201ENSMUST00000157423 108 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm22447-201ENSMUST00000158155 92 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm23258-201ENSMUST00000158319 106 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm24056-201ENSMUST00000158617 146 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm23474-201ENSMUST00000158884 75 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm23864-201ENSMUST00000177607 107 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Mir3569-201ENSMUST00000185080 58 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Tmem167-ps2-201ENSMUST00000190251 214 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm37713-201ENSMUST00000191746 198 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm45430-201ENSMUST00000211276 260 ntTSL 5 BASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 AC164161.1-201ENSMUST00000214076 639 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 AC131759.1-201ENSMUST00000220642 310 ntTSL 3 BASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm46997-201ENSMUST00000222108 217 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm26225-201ENSMUST00000082508 135 ntBASIC3.38□□□□□ -1.87
Ddb1Q3U1J4 Gm22443-201ENSMUST00000082890 107 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 76,532 protein–RNA pairs in 134.8 ms