Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm11060-201ENSMUST00000111107 72 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
ShhQ62226 Gm14448-201ENSMUST00000116383 210 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm9009-201ENSMUST00000117321 326 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm13672-201ENSMUST00000117554 459 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm11936-201ENSMUST00000118323 160 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm13432-201ENSMUST00000118861 241 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm11794-201ENSMUST00000119446 237 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm12443-201ENSMUST00000122308 323 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm15669-201ENSMUST00000147834 526 ntTSL 3 BASIC2.71□□□□□ -1.98
ShhQ62226 Gm25153-201ENSMUST00000157118 156 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm23470-201ENSMUST00000157129 120 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm24716-201ENSMUST00000157524 104 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm16117-201ENSMUST00000160544 324 ntTSL 5 BASIC2.71□□□□□ -1.98
ShhQ62226 Mir6402-201ENSMUST00000183406 80 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm27470-201ENSMUST00000184070 210 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Ska2l-ps-201ENSMUST00000186208 360 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm29818-201ENSMUST00000218070 165 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm22571-201ENSMUST00000082984 70 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm10222-201ENSMUST00000088336 294 ntBASIC2.71□□□□□ -1.98
ShhQ62226 Gm10542-201ENSMUST00000097586 273 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
ShhQ62226 Gpr82-201ENSMUST00000053659 2497 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
ShhQ62226 Vmn1r185-206ENSMUST00000227479 6525 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
ShhQ62226 Olfr849-202ENSMUST00000217273 6140 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
ShhQ62226 Gm38083-201ENSMUST00000194758 3498 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Olfr1325-203ENSMUST00000216108 3535 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
ShhQ62226 Defb43-201ENSMUST00000100491 408 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
ShhQ62226 Gm24122-201ENSMUST00000104107 132 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Gm14971-201ENSMUST00000117980 663 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Gm11460-201ENSMUST00000118200 361 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Gm24601-201ENSMUST00000157970 143 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Gm24726-201ENSMUST00000158232 121 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Gm23474-201ENSMUST00000158884 75 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Mir3076-201ENSMUST00000175415 60 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Mir7667-201ENSMUST00000183866 63 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Gm44476-201ENSMUST00000196225 91 ntBASIC2.7□□□□□ -1.98
ShhQ62226 AC154296.1-201ENSMUST00000198150 67 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Gm2829-201ENSMUST00000213121 499 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Defb21-201ENSMUST00000070722 427 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
ShhQ62226 Gm25078-201ENSMUST00000082530 107 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Gm22062-201ENSMUST00000082563 107 ntBASIC2.7□□□□□ -1.98
ShhQ62226 Mir32-201ENSMUST00000083610 70 ntBASIC2.7□□□□□ -1.98
ShhQ62226 4930524B17Rik-201ENSMUST00000200755 1870 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
ShhQ62226 Olfr1208-203ENSMUST00000214297 2844 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
ShhQ62226 Slain1os-201ENSMUST00000160117 3101 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
ShhQ62226 Olfr1487-204ENSMUST00000216688 2038 ntTSL 5 BASIC2.69□□□□□ -1.98
ShhQ62226 Pak3-202ENSMUST00000112863 8657 ntAPPRIS ALT1 TSL 5 BASIC2.69□□□□□ -1.98
ShhQ62226 Vmn2r68-201ENSMUST00000061074 2556 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
ShhQ62226 Olfr609-202ENSMUST00000216075 3429 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
ShhQ62226 Mroh9-201ENSMUST00000096608 2956 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
ShhQ62226 Gm14069-201ENSMUST00000120815 229 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm25269-201ENSMUST00000122601 104 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm25543-201ENSMUST00000122678 312 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm24909-201ENSMUST00000157290 280 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm22839-201ENSMUST00000158436 304 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm24878-201ENSMUST00000158782 104 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm23476-201ENSMUST00000158881 274 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm24799-201ENSMUST00000178431 79 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm27747-201ENSMUST00000184707 85 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm38060-201ENSMUST00000194822 464 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm44526-201ENSMUST00000204664 121 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm26497-201ENSMUST00000083146 107 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Gm10033-201ENSMUST00000072427 1813 ntBASIC2.69□□□□□ -1.98
ShhQ62226 Cylc1-201ENSMUST00000101282 1923 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
ShhQ62226 Ctdspl2-202ENSMUST00000110572 4160 ntTSL 5 BASIC2.68□□□□□ -1.98
ShhQ62226 Mir499-201ENSMUST00000102357 79 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Mir465b-1-201ENSMUST00000103940 79 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Mir465b-2-201ENSMUST00000104662 79 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Gm25643-201ENSMUST00000158874 103 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Gm16584-201ENSMUST00000159267 189 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Ifi206-202ENSMUST00000169797 429 ntTSL 5 BASIC2.68□□□□□ -1.98
ShhQ62226 Gm26200-201ENSMUST00000180273 79 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Mrgprb1-203ENSMUST00000188918 435 ntTSL 3 BASIC2.68□□□□□ -1.98
ShhQ62226 Mir3535-201ENSMUST00000197651 147 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Gm43978-201ENSMUST00000203491 451 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Gm45687-201ENSMUST00000209454 155 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Gm45365-201ENSMUST00000209489 256 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Olfr1041-ps1-201ENSMUST00000215884 271 ntBASIC2.68□□□□□ -1.98
ShhQ62226 AC158606.1-201ENSMUST00000220078 325 ntBASIC2.68□□□□□ -1.98
ShhQ62226 CT025579.1-201ENSMUST00000223779 366 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Gm43379-201ENSMUST00000196253 7726 ntBASIC2.68□□□□□ -1.98
ShhQ62226 Olfr894-202ENSMUST00000212992 3234 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
ShhQ62226 Gm25943-201ENSMUST00000103791 90 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Mir466b-7-201ENSMUST00000103804 88 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Mir466b-5-201ENSMUST00000103900 88 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm23011-201ENSMUST00000104148 132 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm26342-201ENSMUST00000104557 129 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Mir878-201ENSMUST00000104680 78 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm22141-201ENSMUST00000157403 277 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm26426-201ENSMUST00000177866 123 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm23933-201ENSMUST00000178405 79 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm23141-201ENSMUST00000178682 94 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Mir466b-4-201ENSMUST00000178801 90 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm25285-201ENSMUST00000178951 90 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm25450-201ENSMUST00000179144 107 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Mir466b-6-201ENSMUST00000180061 90 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm26060-201ENSMUST00000180094 123 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Mir466c-2-201ENSMUST00000180211 90 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Gm44308-201ENSMUST00000197080 99 ntBASIC2.67□□□□□ -1.98
ShhQ62226 Igkv15-102-201ENSMUST00000197885 287 ntBASIC2.67□□□□□ -1.98
ShhQ62226 4930431L21Rik-202ENSMUST00000200253 624 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
Retrieved 100 of 76,532 protein–RNA pairs in 94.7 ms