Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm37096-201ENSMUST00000192317 2058 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Zfp970-202ENSMUST00000108952 1569 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
ShhQ62226 Zfp119a-201ENSMUST00000079642 2018 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
ShhQ62226 Mir875-201ENSMUST00000104698 78 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm13729-201ENSMUST00000120328 406 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm24629-201ENSMUST00000122762 89 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm24630-201ENSMUST00000122768 106 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Dnal1-203ENSMUST00000136159 403 ntTSL 5 BASIC2.75□□□□□ -1.97
ShhQ62226 Gm22814-201ENSMUST00000157452 104 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm15562-201ENSMUST00000161397 426 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
ShhQ62226 Gm8292-201ENSMUST00000162574 396 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Vmn1r-ps83-201ENSMUST00000172677 705 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Mir5118-201ENSMUST00000175551 67 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Mir6355-201ENSMUST00000183687 106 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm27379-201ENSMUST00000183730 123 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm27521-201ENSMUST00000184022 64 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Mir6405-201ENSMUST00000184584 124 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm5329-201ENSMUST00000186898 463 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm20058-201ENSMUST00000186939 284 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm37923-201ENSMUST00000191624 161 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm45296-201ENSMUST00000209625 205 ntBASIC2.75□□□□□ -1.97
ShhQ62226 AC155715.1-201ENSMUST00000213575 463 ntBASIC2.75□□□□□ -1.97
ShhQ62226 CT030166.2-201ENSMUST00000222021 368 ntBASIC2.75□□□□□ -1.97
ShhQ62226 AC160984.2-201ENSMUST00000224927 791 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Snora23-201ENSMUST00000082517 184 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Mir133a-1-201ENSMUST00000083465 68 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm25651-201ENSMUST00000083782 119 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Mgat4c-201ENSMUST00000020039 3735 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
ShhQ62226 Pak3-203ENSMUST00000112864 8612 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
ShhQ62226 Olfr1046-202ENSMUST00000213987 2770 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
ShhQ62226 Gm37515-201ENSMUST00000193321 3817 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Gm44230-201ENSMUST00000203032 3550 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Olfr1129-203ENSMUST00000214773 2403 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
ShhQ62226 Olfr1202-202ENSMUST00000214703 3665 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
ShhQ62226 Mir466b-8-201ENSMUST00000103883 86 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm13967-201ENSMUST00000120404 380 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm23331-201ENSMUST00000157423 108 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm22447-201ENSMUST00000158155 92 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm23542-201ENSMUST00000158208 96 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm25718-201ENSMUST00000158632 118 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm23355-201ENSMUST00000177614 107 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm23047-201ENSMUST00000177661 94 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm23148-201ENSMUST00000180367 107 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm28629-201ENSMUST00000187309 263 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm42570-201ENSMUST00000195937 292 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Mir466e-201ENSMUST00000198862 84 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Mir466c-1-201ENSMUST00000200654 84 ntBASIC2.74□□□□□ -1.97
ShhQ62226 AC120555.1-201ENSMUST00000221020 222 ntTSL 5 BASIC2.74□□□□□ -1.97
ShhQ62226 CT010454.1-201ENSMUST00000225975 265 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm22443-201ENSMUST00000082890 107 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm25258-201ENSMUST00000083049 107 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm23731-201ENSMUST00000083749 107 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm24522-201ENSMUST00000083964 108 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm45104-201ENSMUST00000208748 4350 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Tlr3-202ENSMUST00000167106 4093 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
ShhQ62226 Gm38211-201ENSMUST00000192814 7217 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Gm45257-201ENSMUST00000210301 3998 ntBASIC2.74□□□□□ -1.97
ShhQ62226 Zfp40-206ENSMUST00000172177 2736 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
ShhQ62226 Gm11414-201ENSMUST00000121795 263 ntBASIC2.73□□□□□ -1.97
ShhQ62226 Gm14402-201ENSMUST00000122217 508 ntBASIC2.73□□□□□ -1.97
ShhQ62226 Gm15561-201ENSMUST00000124326 540 ntTSL 3 BASIC2.73□□□□□ -1.97
ShhQ62226 Gm5168-202ENSMUST00000168002 636 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
ShhQ62226 Gm4468-201ENSMUST00000170206 294 ntBASIC2.73□□□□□ -1.97
ShhQ62226 Gm24816-201ENSMUST00000175311 151 ntBASIC2.73□□□□□ -1.97
ShhQ62226 Gm26928-201ENSMUST00000182674 572 ntBASIC2.73□□□□□ -1.97
ShhQ62226 Gm37713-201ENSMUST00000191746 198 ntBASIC2.73□□□□□ -1.97
ShhQ62226 AC145736.2-201ENSMUST00000216305 365 ntBASIC2.73□□□□□ -1.97
ShhQ62226 Gm29521-204ENSMUST00000216859 279 ntTSL 5 BASIC2.73□□□□□ -1.97
ShhQ62226 AC131759.1-201ENSMUST00000220642 310 ntTSL 3 BASIC2.73□□□□□ -1.97
ShhQ62226 AC135292.1-201ENSMUST00000227665 204 ntBASIC2.73□□□□□ -1.97
ShhQ62226 AC161758.2-201ENSMUST00000228513 218 ntBASIC2.73□□□□□ -1.97
ShhQ62226 Mir184-201ENSMUST00000083662 69 ntBASIC2.73□□□□□ -1.97
ShhQ62226 Olfr776-202ENSMUST00000213512 3499 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
ShhQ62226 Olfr509-203ENSMUST00000214861 3535 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
ShhQ62226 Olfr1447-203ENSMUST00000216989 2586 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
ShhQ62226 Olfr869-201ENSMUST00000213024 1783 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
ShhQ62226 Olfr835-202ENSMUST00000213018 2690 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
ShhQ62226 Gm15526-201ENSMUST00000112504 204 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm11572-201ENSMUST00000119164 120 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm14792-201ENSMUST00000119725 258 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm12723-201ENSMUST00000120700 451 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm15205-201ENSMUST00000129329 632 ntTSL 5 BASIC2.72□□□□□ -1.97
ShhQ62226 Gm11240-201ENSMUST00000142047 751 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
ShhQ62226 Gm27723-201ENSMUST00000157398 63 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm24348-201ENSMUST00000158710 130 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm24308-201ENSMUST00000177773 114 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm28848-201ENSMUST00000189984 168 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm44337-201ENSMUST00000196553 114 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm45452-201ENSMUST00000210905 177 ntBASIC2.72□□□□□ -1.97
ShhQ62226 AC155712.1-201ENSMUST00000219704 160 ntBASIC2.72□□□□□ -1.97
ShhQ62226 CT030159.4-201ENSMUST00000221966 395 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Olfr470-201ENSMUST00000073059 945 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
ShhQ62226 Gm10088-201ENSMUST00000074116 423 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Gm9772-201ENSMUST00000075018 408 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
ShhQ62226 Gm24316-201ENSMUST00000083041 107 ntBASIC2.72□□□□□ -1.97
ShhQ62226 Olfr789-202ENSMUST00000213992 4421 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
ShhQ62226 Zfp97-201ENSMUST00000147630 2684 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
ShhQ62226 Vmn1r67-202ENSMUST00000226237 2352 ntAPPRIS ALT2 BASIC2.71□□□□□ -1.98
ShhQ62226 Olfr1107-202ENSMUST00000214049 4388 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
ShhQ62226 Olfr509-204ENSMUST00000215075 3418 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
Retrieved 100 of 76,532 protein–RNA pairs in 100.5 ms