Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Rps15a-ps5-201ENSMUST00000132586 393 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm23559-201ENSMUST00000157824 103 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm24501-201ENSMUST00000158452 62 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm24056-201ENSMUST00000158617 146 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm22500-201ENSMUST00000158982 99 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm17469-201ENSMUST00000177942 498 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm17693-201ENSMUST00000178004 498 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm17361-201ENSMUST00000178121 498 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm17522-201ENSMUST00000178144 498 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm21616-201ENSMUST00000178416 498 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm17584-201ENSMUST00000178471 498 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm17267-201ENSMUST00000178952 499 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm29414-201ENSMUST00000185379 448 ntTSL 3 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm18357-201ENSMUST00000188184 580 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm36891-201ENSMUST00000191995 655 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm43250-201ENSMUST00000196536 273 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Igkv13-71-1-201ENSMUST00000199934 264 ntBASIC2.79□□□□□ -1.96
ShhQ62226 AC155839.1-201ENSMUST00000200105 147 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Trav7d-2-201ENSMUST00000200127 337 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm43600-201ENSMUST00000202134 223 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm34648-201ENSMUST00000202460 338 ntTSL 2 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm44473-201ENSMUST00000204039 152 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm44010-201ENSMUST00000204432 331 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm10298-201ENSMUST00000074801 265 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm43879-201ENSMUST00000203811 3760 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Olfr135-202ENSMUST00000213217 2917 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
ShhQ62226 Cyp3a41a-201ENSMUST00000094111 2060 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
ShhQ62226 Hsf3-202ENSMUST00000119035 2691 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
ShhQ62226 Olfr657-203ENSMUST00000215454 2397 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
ShhQ62226 Olfr110-201ENSMUST00000168318 1639 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm13479-201ENSMUST00000130773 4722 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
ShhQ62226 Olfr786-202ENSMUST00000204529 2824 ntAPPRIS P1 TSL 3 BASIC2.78□□□□□ -1.96
ShhQ62226 Vmn1r172-202ENSMUST00000173101 9109 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
ShhQ62226 Cyp3a59-201ENSMUST00000035571 1990 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
ShhQ62226 Vmn1r46-206ENSMUST00000228401 10955 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
ShhQ62226 Olfr298-204ENSMUST00000217110 3549 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
ShhQ62226 Olfr165-202ENSMUST00000206110 1862 ntAPPRIS ALT1 TSL 3 BASIC2.78□□□□□ -1.96
ShhQ62226 mt-Nd5-201ENSMUST00000082418 1824 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
ShhQ62226 Gm22782-201ENSMUST00000104082 132 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Rpl31-ps22-201ENSMUST00000117961 337 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Gm15183-201ENSMUST00000118933 348 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Gm12934-201ENSMUST00000119221 343 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Gm12876-201ENSMUST00000120975 408 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Gm26256-201ENSMUST00000122499 186 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Tnfaip8-206ENSMUST00000145726 632 ntTSL 3 BASIC2.78□□□□□ -1.96
ShhQ62226 Gm23829-201ENSMUST00000157392 270 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Mir8096-201ENSMUST00000184526 127 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Gm42439-201ENSMUST00000195931 486 ntTSL 3 BASIC2.78□□□□□ -1.96
ShhQ62226 Mir7661-201ENSMUST00000197023 61 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Gm43286-201ENSMUST00000197420 424 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Gm43746-201ENSMUST00000200028 317 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Gm44524-201ENSMUST00000203899 271 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Scgb2b2-202ENSMUST00000205821 357 ntTSL 5 BASIC2.78□□□□□ -1.96
ShhQ62226 Olfr515-ps1-201ENSMUST00000208389 189 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Calml4-204ENSMUST00000214633 394 ntTSL 3 BASIC2.78□□□□□ -1.96
ShhQ62226 AC154576.2-202ENSMUST00000223916 688 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Gm26327-201ENSMUST00000093724 111 ntBASIC2.78□□□□□ -1.96
ShhQ62226 Slc16a7-206ENSMUST00000211781 10981 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
ShhQ62226 Olfr1325-202ENSMUST00000216007 3617 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
ShhQ62226 Muc16-204ENSMUST00000208663 25437 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
ShhQ62226 AC160115.1-201ENSMUST00000224678 1574 ntBASIC2.78□□□□□ -1.96
ShhQ62226 AC158979.1-201ENSMUST00000223594 2252 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Gm26500-201ENSMUST00000101867 106 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Gm5937-201ENSMUST00000119715 643 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Gm15213-201ENSMUST00000122098 216 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Gm25184-201ENSMUST00000157753 163 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Gm22961-201ENSMUST00000157964 106 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Gm20651-201ENSMUST00000177219 329 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Gm29602-201ENSMUST00000186887 442 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Gm8013-201ENSMUST00000200139 462 ntTSL 2 BASIC2.77□□□□□ -1.97
ShhQ62226 Gm40810-201ENSMUST00000219149 253 ntBASIC2.77□□□□□ -1.97
ShhQ62226 AC129202.2-201ENSMUST00000225123 177 ntBASIC2.77□□□□□ -1.97
ShhQ62226 AC151833.1-201ENSMUST00000227752 574 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Gm23453-201ENSMUST00000083326 106 ntBASIC2.77□□□□□ -1.97
ShhQ62226 Defa25-201ENSMUST00000095425 279 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
ShhQ62226 Olfr1111-202ENSMUST00000214492 1616 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
ShhQ62226 Olfr1042-201ENSMUST00000099908 4119 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
ShhQ62226 Tlr7-203ENSMUST00000112164 3468 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
ShhQ62226 Olfr896-ps1-202ENSMUST00000215219 2878 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
ShhQ62226 Fam111a-203ENSMUST00000144662 3912 ntAPPRIS P3 TSL 5 BASIC2.76□□□□□ -1.97
ShhQ62226 A330044P14Rik-201ENSMUST00000176108 2706 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
ShhQ62226 Gm12617-201ENSMUST00000121268 381 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Gm22026-201ENSMUST00000122735 281 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Gm25808-201ENSMUST00000122784 284 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Gm15903-201ENSMUST00000155796 310 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
ShhQ62226 Mir6370-201ENSMUST00000183510 120 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Gm28825-201ENSMUST00000186233 238 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Scgb1b1-ps-201ENSMUST00000189264 268 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Gm37281-201ENSMUST00000192412 439 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Gm36831-201ENSMUST00000196485 631 ntTSL 2 BASIC2.76□□□□□ -1.97
ShhQ62226 Gm43583-201ENSMUST00000199235 303 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Gm43680-201ENSMUST00000199466 340 ntBASIC2.76□□□□□ -1.97
ShhQ62226 CT025619.4-201ENSMUST00000217362 350 ntTSL 2 BASIC2.76□□□□□ -1.97
ShhQ62226 AC163033.1-201ENSMUST00000218608 157 ntBASIC2.76□□□□□ -1.97
ShhQ62226 AL606472.1-201ENSMUST00000224628 275 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Gm10025-201ENSMUST00000079568 372 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Gm23451-201ENSMUST00000083328 122 ntBASIC2.76□□□□□ -1.97
ShhQ62226 Olfr1270-204ENSMUST00000215975 4854 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
ShhQ62226 Gm37296-201ENSMUST00000192728 2922 ntBASIC2.75□□□□□ -1.97
ShhQ62226 Olfr1229-202ENSMUST00000213883 3594 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
Retrieved 100 of 76,532 protein–RNA pairs in 100.3 ms