Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm24443-201ENSMUST00000157242 132 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm22560-201ENSMUST00000157332 120 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm23895-201ENSMUST00000158108 160 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm22113-201ENSMUST00000158343 104 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Vmn1r126-201ENSMUST00000168398 966 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm24415-201ENSMUST00000180218 107 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm27869-201ENSMUST00000184327 122 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm29665-201ENSMUST00000191457 528 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm37361-201ENSMUST00000194345 132 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 7330423F06Rik-201ENSMUST00000197499 301 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm35386-201ENSMUST00000204603 629 ntTSL 3 BASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm10666-201ENSMUST00000098722 966 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Vmn1r114-201ENSMUST00000098737 966 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Vmn1r93-201ENSMUST00000098747 966 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Olfr116-202ENSMUST00000216128 4477 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm44846-201ENSMUST00000207127 3243 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 AC124561.2-201ENSMUST00000226657 1973 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Gm43268-201ENSMUST00000201536 4055 ntBASIC3.59□□□□□ -1.83
Ddb1Q3U1J4 Nlrp9c-202ENSMUST00000085944 3216 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
Ddb1Q3U1J4 Gm12876-201ENSMUST00000120975 408 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm23586-201ENSMUST00000157657 123 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm25384-201ENSMUST00000157807 105 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm22654-201ENSMUST00000157874 105 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm17065-201ENSMUST00000165245 239 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Vmn2r-ps116-201ENSMUST00000175997 126 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm27921-201ENSMUST00000183968 108 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm27700-201ENSMUST00000185003 81 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm29023-201ENSMUST00000190543 325 ntTSL 5 BASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm44157-201ENSMUST00000204720 410 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm44085-201ENSMUST00000205056 372 ntTSL 3 BASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm19563-201ENSMUST00000222031 270 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Gm22507-201ENSMUST00000082773 160 ntBASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Pak3-203ENSMUST00000112864 8612 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Olfr1487-204ENSMUST00000216688 2038 ntTSL 5 BASIC3.58□□□□□ -1.84
Ddb1Q3U1J4 Olfr640-202ENSMUST00000218535 4009 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Ctdspl2-202ENSMUST00000110572 4160 ntTSL 5 BASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm23011-201ENSMUST00000104148 132 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm24338-201ENSMUST00000104205 127 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm14877-201ENSMUST00000119803 478 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm23713-201ENSMUST00000157353 70 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm23641-201ENSMUST00000157857 101 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm22615-201ENSMUST00000158102 70 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm24005-201ENSMUST00000158459 296 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Krtap27-1-201ENSMUST00000165580 646 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Vmn2r-ps65-201ENSMUST00000173309 220 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm25956-201ENSMUST00000175115 217 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm25476-201ENSMUST00000175125 185 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Mir6386-201ENSMUST00000183558 104 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gm25820-202ENSMUST00000197479 128 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 AC165106.2-201ENSMUST00000226749 97 ntBASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Olfr65-201ENSMUST00000106864 2648 ntAPPRIS ALT1 TSL 5 BASIC3.57□□□□□ -1.84
Ddb1Q3U1J4 Gpr22-201ENSMUST00000057783 4587 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Gm42785-201ENSMUST00000202316 3835 ntBASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Vmn1r211-202ENSMUST00000228645 5447 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Mir875-201ENSMUST00000104698 78 ntBASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Gm22026-201ENSMUST00000122735 281 ntBASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Gm24084-201ENSMUST00000175173 137 ntBASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Gm22308-201ENSMUST00000177609 107 ntBASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 1700072O05Rik-201ENSMUST00000204672 321 ntTSL 5 BASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Gm45005-201ENSMUST00000206640 157 ntBASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Gm39380-201ENSMUST00000214710 192 ntTSL 5 BASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Gm45941-202ENSMUST00000223144 389 ntTSL 2 BASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Snora23-201ENSMUST00000082517 184 ntBASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Gm22997-201ENSMUST00000082845 107 ntBASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Gm26329-201ENSMUST00000093723 110 ntBASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Olfr857-202ENSMUST00000212013 2306 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
Ddb1Q3U1J4 Olfr594-202ENSMUST00000214051 2809 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Zfp40-206ENSMUST00000172177 2736 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Olfr1132-202ENSMUST00000216082 3260 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Mir466b-8-201ENSMUST00000103883 86 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Gm23803-201ENSMUST00000104610 132 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Gm13880-201ENSMUST00000118421 474 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Gm3848-202ENSMUST00000151564 301 ntTSL 3 BASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Gm5967-201ENSMUST00000172723 494 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Gm22114-201ENSMUST00000177756 107 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Mir466e-201ENSMUST00000198862 84 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Mir466c-1-201ENSMUST00000200654 84 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 AC158622.1-201ENSMUST00000217107 230 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 AC158631.1-201ENSMUST00000219202 138 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Gm18617-201ENSMUST00000222311 259 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Mir137-201ENSMUST00000083635 73 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 AC117226.1-201ENSMUST00000221635 3737 ntBASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Macc1-203ENSMUST00000221917 4272 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Olfr1222-202ENSMUST00000214027 2393 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Olfr346-202ENSMUST00000213258 4104 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 B3galt2-201ENSMUST00000038252 9288 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
Ddb1Q3U1J4 Olfr592-202ENSMUST00000106893 6566 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Vmn1r46-203ENSMUST00000226715 10861 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Vmn1r46-205ENSMUST00000228349 10861 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm13329-201ENSMUST00000117063 265 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm13355-201ENSMUST00000117996 317 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm11253-201ENSMUST00000118486 201 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm12647-201ENSMUST00000118977 265 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm6374-201ENSMUST00000159051 788 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Snord93-201ENSMUST00000175580 71 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm24487-201ENSMUST00000178017 63 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm6660-201ENSMUST00000179149 468 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm27959-201ENSMUST00000185172 111 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm29147-201ENSMUST00000186846 315 ntBASIC3.54□□□□□ -1.84
Ddb1Q3U1J4 Gm29227-201ENSMUST00000187139 315 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 76,532 protein–RNA pairs in 173.8 ms