Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Mir103-2-201ENSMUST00000083629 86 ntBASIC2.84□□□□□ -1.95
ShhQ62226 Gm23845-201ENSMUST00000083834 152 ntBASIC2.84□□□□□ -1.95
ShhQ62226 Acsm3-201ENSMUST00000063770 2651 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
ShhQ62226 Zfp984-201ENSMUST00000105734 2729 ntAPPRIS P1 TSL 3 BASIC2.84□□□□□ -1.96
ShhQ62226 Olfr124-203ENSMUST00000216478 4416 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.96
ShhQ62226 Olfr1463-202ENSMUST00000207246 2315 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.96
ShhQ62226 Gm43230-201ENSMUST00000200980 2129 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Adgrg4-204ENSMUST00000153784 9329 ntAPPRIS P5 TSL 5 BASIC2.83□□□□□ -1.96
ShhQ62226 Vmn1r82-203ENSMUST00000227672 3651 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Igkv13-84-201ENSMUST00000103339 347 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
ShhQ62226 Gm14020-201ENSMUST00000118165 662 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Gm12956-201ENSMUST00000122184 414 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Gm28305-201ENSMUST00000147249 365 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
ShhQ62226 Gm22099-201ENSMUST00000157925 123 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Gm26061-201ENSMUST00000175584 108 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Gm22951-201ENSMUST00000179471 107 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Gm37616-201ENSMUST00000193974 322 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Gm44055-201ENSMUST00000204376 247 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Gm45355-201ENSMUST00000211342 296 ntTSL 3 BASIC2.83□□□□□ -1.96
ShhQ62226 Gm18015-201ENSMUST00000214879 316 ntBASIC2.83□□□□□ -1.96
ShhQ62226 AC165092.3-201ENSMUST00000223602 282 ntBASIC2.83□□□□□ -1.96
ShhQ62226 AC165284.1-201ENSMUST00000228614 458 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Defb40-201ENSMUST00000066258 389 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
ShhQ62226 Gm25896-201ENSMUST00000083713 136 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Olfr1039-202ENSMUST00000214364 3925 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
ShhQ62226 Olfr1109-203ENSMUST00000217066 2384 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
ShhQ62226 Vmn1r13-203ENSMUST00000227298 5203 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
ShhQ62226 Gm45662-201ENSMUST00000210054 2098 ntBASIC2.83□□□□□ -1.96
ShhQ62226 Gm43326-201ENSMUST00000198459 1638 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Olfr803-202ENSMUST00000204641 2385 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
ShhQ62226 Olfr104-ps-202ENSMUST00000215398 2771 ntAPPRIS P5 TSL 5 BASIC2.82□□□□□ -1.96
ShhQ62226 Gm24282-201ENSMUST00000104232 66 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm24890-201ENSMUST00000104389 102 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Defa-ps8-201ENSMUST00000120972 279 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm23921-201ENSMUST00000175258 107 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm26297-201ENSMUST00000179464 132 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm28257-201ENSMUST00000185244 463 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm30341-201ENSMUST00000194363 289 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm37801-201ENSMUST00000194754 274 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm18433-202ENSMUST00000195682 196 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm34599-201ENSMUST00000198924 288 ntTSL 3 BASIC2.82□□□□□ -1.96
ShhQ62226 Gm43899-201ENSMUST00000203675 246 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm44425-201ENSMUST00000203739 429 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm45005-201ENSMUST00000206640 157 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm45313-201ENSMUST00000210584 178 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm32817-202ENSMUST00000210738 527 ntTSL 2 BASIC2.82□□□□□ -1.96
ShhQ62226 AC239878.2-201ENSMUST00000224048 464 ntBASIC2.82□□□□□ -1.96
ShhQ62226 AC123533.1-201ENSMUST00000227782 446 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm5239-201ENSMUST00000081864 369 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
ShhQ62226 Gm23055-201ENSMUST00000082805 94 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm6020-201ENSMUST00000092094 66 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
ShhQ62226 Gm42675-201ENSMUST00000197552 4035 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm12128-201ENSMUST00000131013 2914 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
ShhQ62226 Gm42639-201ENSMUST00000197061 1871 ntBASIC2.82□□□□□ -1.96
ShhQ62226 Gm44715-201ENSMUST00000209049 3839 ntBASIC2.81□□□□□ -1.96
ShhQ62226 Zfp990-202ENSMUST00000105742 2996 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
ShhQ62226 Gm11388-201ENSMUST00000120908 159 ntBASIC2.81□□□□□ -1.96
ShhQ62226 Gm22187-201ENSMUST00000157819 129 ntBASIC2.81□□□□□ -1.96
ShhQ62226 Gm24213-201ENSMUST00000158255 258 ntBASIC2.81□□□□□ -1.96
ShhQ62226 Gm25362-201ENSMUST00000158854 105 ntBASIC2.81□□□□□ -1.96
ShhQ62226 Gm27997-201ENSMUST00000184942 69 ntBASIC2.81□□□□□ -1.96
ShhQ62226 Gm18341-201ENSMUST00000197538 622 ntBASIC2.81□□□□□ -1.96
ShhQ62226 Gm42578-201ENSMUST00000199960 194 ntBASIC2.81□□□□□ -1.96
ShhQ62226 S100z-201ENSMUST00000022186 399 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
ShhQ62226 Gm23625-201ENSMUST00000082457 100 ntBASIC2.81□□□□□ -1.96
ShhQ62226 Fam71d-201ENSMUST00000077968 1772 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
ShhQ62226 AC122850.1-201ENSMUST00000220380 5690 ntBASIC2.81□□□□□ -1.96
ShhQ62226 Olfr592-202ENSMUST00000106893 6566 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
ShhQ62226 Olfr25-203ENSMUST00000214155 6479 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
ShhQ62226 Wnk3-201ENSMUST00000096285 8551 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
ShhQ62226 Olfr1457-204ENSMUST00000215229 2538 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
ShhQ62226 Olfr235-203ENSMUST00000214551 2240 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
ShhQ62226 Trbv30-201ENSMUST00000103282 332 ntAPPRIS ALT2 BASIC2.8□□□□□ -1.96
ShhQ62226 Gm15714-201ENSMUST00000117168 250 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm9850-201ENSMUST00000117916 227 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm24937-201ENSMUST00000122597 134 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm13656-201ENSMUST00000123829 345 ntTSL 3 BASIC2.8□□□□□ -1.96
ShhQ62226 Gm23232-201ENSMUST00000157300 105 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm22389-201ENSMUST00000158193 301 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm22666-201ENSMUST00000158717 164 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm23268-201ENSMUST00000175494 78 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Mir7009-201ENSMUST00000184519 64 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm36946-201ENSMUST00000192706 435 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm19202-201ENSMUST00000198096 808 ntBASIC2.8□□□□□ -1.96
ShhQ62226 AC091764.1-201ENSMUST00000218029 132 ntTSL 5 BASIC2.8□□□□□ -1.96
ShhQ62226 Gm35101-201ENSMUST00000219218 243 ntTSL 5 BASIC2.8□□□□□ -1.96
ShhQ62226 AC127371.1-202ENSMUST00000228923 306 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm22685-201ENSMUST00000082848 106 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm23723-201ENSMUST00000082996 132 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Gm26314-201ENSMUST00000083891 107 ntBASIC2.8□□□□□ -1.96
ShhQ62226 Vmn2r42-205ENSMUST00000146278 3086 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
ShhQ62226 C87977-201ENSMUST00000105753 2446 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
ShhQ62226 1700006A11Rik-201ENSMUST00000029598 2161 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
ShhQ62226 Olfr1240-202ENSMUST00000216123 4603 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
ShhQ62226 Vmn1r19-201ENSMUST00000089830 2255 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
ShhQ62226 Trav7-2-201ENSMUST00000103636 336 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm11115-201ENSMUST00000113255 54 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
ShhQ62226 Gm13378-201ENSMUST00000117483 336 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm11356-201ENSMUST00000118974 192 ntBASIC2.79□□□□□ -1.96
ShhQ62226 Gm8260-201ENSMUST00000119230 353 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 76,532 protein–RNA pairs in 107.9 ms