Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Snord95-201ENSMUST00000082846 68 ntBASIC0.07□□□□□ -2.4
Ccdc88bQ4QRL3 Snrpert-201ENSMUST00000121967 279 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Gm15213-201ENSMUST00000122098 216 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Gm5116-201ENSMUST00000187732 463 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Gm6003-201ENSMUST00000187903 463 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Gm29627-201ENSMUST00000187984 463 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Gm29490-201ENSMUST00000190923 342 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Gm29950-201ENSMUST00000195273 237 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Ranbp2-ps11-201ENSMUST00000197185 387 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 AC157494.1-201ENSMUST00000221127 549 ntTSL 5 BASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Mir411-201ENSMUST00000083543 82 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Snord33-201ENSMUST00000083694 84 ntBASIC0.06□□□□□ -2.4
Ccdc88bQ4QRL3 Ppp1r42-201ENSMUST00000027049 1425 ntAPPRIS P1 TSL 1 (best) BASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 Gm14362-201ENSMUST00000121679 273 ntBASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 Gm15254-201ENSMUST00000149567 273 ntBASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 Gm22164-201ENSMUST00000158413 106 ntBASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 Gm29277-201ENSMUST00000185226 602 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 Gm29089-201ENSMUST00000186209 602 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 Gm7654-201ENSMUST00000186738 683 ntBASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 AC159476.2-201ENSMUST00000216221 418 ntBASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 Gm26224-201ENSMUST00000082506 80 ntBASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 Gm5581-201ENSMUST00000072940 2550 ntBASIC0.05□□□□□ -2.4
Ccdc88bQ4QRL3 Gm24587-201ENSMUST00000116697 89 ntBASIC0.04□□□□□ -2.4
Ccdc88bQ4QRL3 Gm20874-201ENSMUST00000178356 663 ntBASIC0.04□□□□□ -2.4
Ccdc88bQ4QRL3 Vmn2r-ps19-201ENSMUST00000179720 269 ntBASIC0.04□□□□□ -2.4
Ccdc88bQ4QRL3 Gm19280-201ENSMUST00000190191 205 ntBASIC0.04□□□□□ -2.4
Ccdc88bQ4QRL3 Gm28337-201ENSMUST00000190425 666 ntBASIC0.04□□□□□ -2.4
Ccdc88bQ4QRL3 Gm29433-201ENSMUST00000191241 253 ntTSL 5 BASIC0.04□□□□□ -2.4
Ccdc88bQ4QRL3 Gm31123-201ENSMUST00000192094 666 ntBASIC0.04□□□□□ -2.4
Ccdc88bQ4QRL3 Gm8940-201ENSMUST00000212585 219 ntBASIC0.04□□□□□ -2.4
Ccdc88bQ4QRL3 Mir125b-2-201ENSMUST00000083538 71 ntBASIC0.04□□□□□ -2.4
Ccdc88bQ4QRL3 Gm12392-201ENSMUST00000118014 938 ntBASIC0.03□□□□□ -2.4
Ccdc88bQ4QRL3 Gm14903-201ENSMUST00000122435 537 ntBASIC0.03□□□□□ -2.4
Ccdc88bQ4QRL3 Gm29600-201ENSMUST00000188687 377 ntBASIC0.03□□□□□ -2.4
Ccdc88bQ4QRL3 Gm38006-201ENSMUST00000192421 697 ntTSL 5 BASIC0.03□□□□□ -2.4
Ccdc88bQ4QRL3 Gm2628-201ENSMUST00000218019 426 ntBASIC0.03□□□□□ -2.4
Ccdc88bQ4QRL3 Gm12656-201ENSMUST00000118149 577 ntBASIC0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm26038-201ENSMUST00000158151 106 ntBASIC0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm24925-201ENSMUST00000178157 107 ntBASIC0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm20257-202ENSMUST00000188643 130 ntBASIC0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm3333-201ENSMUST00000221637 452 ntTSL 5 BASIC0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Traj38-201ENSMUST00000103704 62 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Gm16458-201ENSMUST00000121428 502 ntBASIC0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Gm42719-201ENSMUST00000197393 355 ntBASIC0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Gm42807-201ENSMUST00000200141 329 ntBASIC0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Defb50-201ENSMUST00000078879 373 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Mir214-201ENSMUST00000083582 110 ntBASIC0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Mir487b-201ENSMUST00000102265 82 ntBASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 n-R5s187-201ENSMUST00000122769 111 ntBASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Gm15327-202ENSMUST00000153958 467 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Gm26275-201ENSMUST00000157101 268 ntBASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 9230113P08Rik-202ENSMUST00000176153 414 ntAPPRIS P5 TSL 5 BASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Gm7329-201ENSMUST00000185915 210 ntBASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Gm37650-201ENSMUST00000193570 248 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Gm45636-201ENSMUST00000210497 1064 ntBASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 DQ267101-201ENSMUST00000082562 73 ntBASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Mir382-201ENSMUST00000083494 76 ntBASIC0.01□□□□□ -2.41
Ccdc88bQ4QRL3 n-R5s202-201ENSMUST00000104517 114 ntBASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm12053-201ENSMUST00000119022 252 ntBASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm25393-201ENSMUST00000157336 285 ntBASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm18406-201ENSMUST00000185872 669 ntBASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm29413-201ENSMUST00000186019 880 ntBASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm29134-201ENSMUST00000186579 126 ntBASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm20855-202ENSMUST00000186996 924 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm28870-201ENSMUST00000187033 880 ntAPPRIS P1 TSL 5 BASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm20911-201ENSMUST00000187135 924 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm28102-201ENSMUST00000187146 924 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm29639-201ENSMUST00000188375 580 ntBASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm20850-201ENSMUST00000188672 924 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm20869-201ENSMUST00000188958 924 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm21477-202ENSMUST00000189543 924 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 AC122769.2-201ENSMUST00000227248 302 ntBASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm25703-201ENSMUST00000083123 151 ntBASIC0□□□□□ -2.41
Ccdc88bQ4QRL3 Gm13046-201ENSMUST00000117391 501 ntBASIC-0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Gm22768-201ENSMUST00000158366 153 ntBASIC-0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Gm8897-202ENSMUST00000179679 465 ntAPPRIS ALT2 TSL 5 BASIC-0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Gm32531-201ENSMUST00000209324 373 ntTSL 3 BASIC-0.01□□□□□ -2.41
Ccdc88bQ4QRL3 Gm24833-201ENSMUST00000116775 120 ntBASIC-0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Olfr1144-ps1-201ENSMUST00000118227 328 ntBASIC-0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Gm27878-201ENSMUST00000184000 106 ntBASIC-0.02□□□□□ -2.41
Ccdc88bQ4QRL3 D030025E07Rik-205ENSMUST00000198478 418 ntTSL 3 BASIC-0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Vmn1r85-202ENSMUST00000209822 1251 ntAPPRIS P1 TSL 2 BASIC-0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Olfr1064-ps1-201ENSMUST00000213670 600 ntBASIC-0.02□□□□□ -2.41
Ccdc88bQ4QRL3 AC134334.1-201ENSMUST00000214277 255 ntBASIC-0.02□□□□□ -2.41
Ccdc88bQ4QRL3 CT009733.1-201ENSMUST00000225322 425 ntBASIC-0.02□□□□□ -2.41
Ccdc88bQ4QRL3 Gm22785-201ENSMUST00000104087 132 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm14411-201ENSMUST00000121798 914 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm22796-201ENSMUST00000157234 106 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Ighv15-1-201ENSMUST00000194450 276 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm17987-201ENSMUST00000206902 603 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 AC101945.3-201ENSMUST00000226568 153 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm24372-201ENSMUST00000104400 110 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm22706-201ENSMUST00000157907 112 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Obox3-ps7-201ENSMUST00000176465 410 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Snora16a-202ENSMUST00000196061 137 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm6607-201ENSMUST00000215035 328 ntBASIC-0.03□□□□□ -2.41
Ccdc88bQ4QRL3 Gm24908-201ENSMUST00000157294 127 ntBASIC-0.04□□□□□ -2.42
Ccdc88bQ4QRL3 Vmn1r-ps62-201ENSMUST00000173275 910 ntBASIC-0.04□□□□□ -2.42
Ccdc88bQ4QRL3 Ranbp2-ps3-201ENSMUST00000183549 388 ntBASIC-0.04□□□□□ -2.42
Ccdc88bQ4QRL3 Mirlet7f-1-201ENSMUST00000198652 89 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 76,532 protein–RNA pairs in 91.2 ms