Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.22■□□□□ 0.83
Scn11aQ9R053 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.22■□□□□ 0.83
Scn11aQ9R053 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Scn11aQ9R053 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn11aQ9R053 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn11aQ9R053 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 AC124569.2-201ENSMUST00000225998 818 ntBASIC20.21■□□□□ 0.83
Scn11aQ9R053 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Gm18206-201ENSMUST00000207027 926 ntBASIC20.21■□□□□ 0.83
Scn11aQ9R053 AC153889.1-201ENSMUST00000219257 330 ntBASIC20.21■□□□□ 0.83
Scn11aQ9R053 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC20.21■□□□□ 0.83
Scn11aQ9R053 Gfra2-202ENSMUST00000227633 1480 ntBASIC20.2■□□□□ 0.82
Scn11aQ9R053 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn11aQ9R053 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn11aQ9R053 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn11aQ9R053 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Scn11aQ9R053 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Scn11aQ9R053 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC20.2■□□□□ 0.82
Scn11aQ9R053 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC20.2■□□□□ 0.82
Scn11aQ9R053 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC20.2■□□□□ 0.82
Scn11aQ9R053 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC20.2■□□□□ 0.82
Scn11aQ9R053 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn11aQ9R053 Birc2-201ENSMUST00000054878 378 ntBASIC20.2■□□□□ 0.82
Scn11aQ9R053 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn11aQ9R053 Gm29707-201ENSMUST00000196325 491 ntBASIC20.19■□□□□ 0.82
Scn11aQ9R053 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Scn11aQ9R053 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Scn11aQ9R053 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.19■□□□□ 0.82
Scn11aQ9R053 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn11aQ9R053 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn11aQ9R053 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Gm5864-201ENSMUST00000202263 970 ntBASIC20.18■□□□□ 0.82
Scn11aQ9R053 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC20.18■□□□□ 0.82
Scn11aQ9R053 AC154621.1-201ENSMUST00000226155 1119 ntBASIC20.18■□□□□ 0.82
Scn11aQ9R053 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Gm11620-201ENSMUST00000118770 1845 ntBASIC20.18■□□□□ 0.82
Scn11aQ9R053 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Scn11aQ9R053 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Gm37194-201ENSMUST00000193092 3031 ntBASIC20.17■□□□□ 0.82
Scn11aQ9R053 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Scn11aQ9R053 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Gm45203-201ENSMUST00000206384 1831 ntBASIC20.16■□□□□ 0.82
Scn11aQ9R053 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Gm10052-201ENSMUST00000168019 960 ntBASIC20.16■□□□□ 0.82
Scn11aQ9R053 Gm7729-201ENSMUST00000050143 801 ntBASIC20.16■□□□□ 0.82
Scn11aQ9R053 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC20.16■□□□□ 0.82
Scn11aQ9R053 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn11aQ9R053 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn11aQ9R053 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn11aQ9R053 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn11aQ9R053 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.15■□□□□ 0.82
Scn11aQ9R053 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
Scn11aQ9R053 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Scn11aQ9R053 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms