Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Lima1Q9ERG0 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Gm8839-201ENSMUST00000121279 1645 ntBASIC16.85■□□□□ 0.29
Lima1Q9ERG0 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Gm11927-201ENSMUST00000118472 759 ntBASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lima1Q9ERG0 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Lima1Q9ERG0 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Lima1Q9ERG0 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Lima1Q9ERG0 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
Lima1Q9ERG0 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Lima1Q9ERG0 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Gm2559-201ENSMUST00000201323 363 ntBASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Lima1Q9ERG0 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Gm11620-201ENSMUST00000118770 1845 ntBASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Dio3-201ENSMUST00000097228 1449 ntBASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Gm37820-201ENSMUST00000194021 2147 ntBASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Lima1Q9ERG0 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms