Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdc40Q9DC48 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC15.86■□□□□ 0.13
Cdc40Q9DC48 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC15.86■□□□□ 0.13
Cdc40Q9DC48 Gm43272-201ENSMUST00000200599 1584 ntBASIC15.86■□□□□ 0.13
Cdc40Q9DC48 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Cdc40Q9DC48 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdc40Q9DC48 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Cdc40Q9DC48 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Cdc40Q9DC48 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Cdc40Q9DC48 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC15.84■□□□□ 0.13
Cdc40Q9DC48 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Cdc40Q9DC48 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cdc40Q9DC48 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cdc40Q9DC48 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Cdc40Q9DC48 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
Cdc40Q9DC48 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC15.82■□□□□ 0.12
Cdc40Q9DC48 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.81■□□□□ 0.12
Cdc40Q9DC48 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms