Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ddx56Q9D0R4 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Gm21814-202ENSMUST00000203277 873 ntBASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Gm3375-201ENSMUST00000203929 796 ntBASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ddx56Q9D0R4 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 AC120002.2-201ENSMUST00000220205 773 ntBASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ddx56Q9D0R4 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Ddx56Q9D0R4 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
Ddx56Q9D0R4 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx56Q9D0R4 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx56Q9D0R4 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx56Q9D0R4 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx56Q9D0R4 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx56Q9D0R4 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx56Q9D0R4 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx56Q9D0R4 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx56Q9D0R4 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx56Q9D0R4 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Gm5297-201ENSMUST00000198555 1171 ntBASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Gm7791-201ENSMUST00000219066 539 ntBASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx56Q9D0R4 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms