Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Msh4Q99MT2 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Gm10418-201ENSMUST00000100943 576 ntBASIC16.62■□□□□ 0.25
Msh4Q99MT2 Gm5417-201ENSMUST00000079706 384 ntBASIC16.62■□□□□ 0.25
Msh4Q99MT2 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Gm45244-201ENSMUST00000211328 2200 ntBASIC16.62■□□□□ 0.25
Msh4Q99MT2 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Msh4Q99MT2 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.61■□□□□ 0.25
Msh4Q99MT2 AC156016.1-201ENSMUST00000227190 1035 ntBASIC16.61■□□□□ 0.25
Msh4Q99MT2 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Msh4Q99MT2 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Gm20472-201ENSMUST00000174403 1240 ntBASIC16.6■□□□□ 0.25
Msh4Q99MT2 Gm29791-202ENSMUST00000207888 369 ntBASIC16.6■□□□□ 0.25
Msh4Q99MT2 Timm23-208ENSMUST00000226683 750 ntBASIC16.6■□□□□ 0.25
Msh4Q99MT2 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Msh4Q99MT2 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Gm15565-201ENSMUST00000118890 427 ntBASIC16.59■□□□□ 0.25
Msh4Q99MT2 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Msh4Q99MT2 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC16.59■□□□□ 0.25
Msh4Q99MT2 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms