Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.11■□□□□ 0.17
Clrn1Q8K445 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Clrn1Q8K445 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clrn1Q8K445 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.09■□□□□ 0.17
Clrn1Q8K445 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Odf3b-204ENSMUST00000227834 930 ntBASIC16.09■□□□□ 0.17
Clrn1Q8K445 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clrn1Q8K445 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC16.08■□□□□ 0.17
Clrn1Q8K445 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Gm7638-201ENSMUST00000121348 967 ntBASIC16.08■□□□□ 0.16
Clrn1Q8K445 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clrn1Q8K445 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clrn1Q8K445 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Clrn1Q8K445 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Gm3375-201ENSMUST00000203929 796 ntBASIC16.07■□□□□ 0.16
Clrn1Q8K445 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Gm43338-201ENSMUST00000198617 2223 ntBASIC16.07■□□□□ 0.16
Clrn1Q8K445 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clrn1Q8K445 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clrn1Q8K445 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms