Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col7a1Q63870 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col7a1Q63870 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col7a1Q63870 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Col7a1Q63870 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Col7a1Q63870 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.16□□□□□ -0.14
Col7a1Q63870 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Col7a1Q63870 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.16□□□□□ -0.14
Col7a1Q63870 AC124603.1-201ENSMUST00000223843 308 ntBASIC14.16□□□□□ -0.14
Col7a1Q63870 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC14.16□□□□□ -0.14
Col7a1Q63870 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC14.16□□□□□ -0.14
Col7a1Q63870 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col7a1Q63870 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
Col7a1Q63870 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC14.15□□□□□ -0.14
Col7a1Q63870 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.15□□□□□ -0.14
Col7a1Q63870 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC14.15□□□□□ -0.14
Col7a1Q63870 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC14.15□□□□□ -0.14
Col7a1Q63870 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col7a1Q63870 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Col7a1Q63870 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col7a1Q63870 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col7a1Q63870 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col7a1Q63870 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC14.14□□□□□ -0.15
Col7a1Q63870 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC14.14□□□□□ -0.15
Col7a1Q63870 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.14□□□□□ -0.15
Col7a1Q63870 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col7a1Q63870 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.14□□□□□ -0.15
Col7a1Q63870 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col7a1Q63870 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col7a1Q63870 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col7a1Q63870 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col7a1Q63870 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col7a1Q63870 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Col7a1Q63870 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC14.13□□□□□ -0.15
Col7a1Q63870 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 H2-Pa-201ENSMUST00000182803 626 ntBASIC14.13□□□□□ -0.15
Col7a1Q63870 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Col7a1Q63870 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.13□□□□□ -0.15
Col7a1Q63870 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.13□□□□□ -0.15
Col7a1Q63870 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.13□□□□□ -0.15
Col7a1Q63870 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC14.13□□□□□ -0.15
Col7a1Q63870 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
Col7a1Q63870 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col7a1Q63870 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC14.12□□□□□ -0.15
Col7a1Q63870 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
Col7a1Q63870 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC14.12□□□□□ -0.15
Col7a1Q63870 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Col7a1Q63870 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col7a1Q63870 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC14.12□□□□□ -0.15
Col7a1Q63870 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.12□□□□□ -0.15
Col7a1Q63870 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms