Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CtcfQ61164 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CtcfQ61164 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CtcfQ61164 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CtcfQ61164 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC18.79■□□□□ 0.6
CtcfQ61164 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CtcfQ61164 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CtcfQ61164 Gm12933-201ENSMUST00000120203 872 ntBASIC18.79■□□□□ 0.6
CtcfQ61164 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CtcfQ61164 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CtcfQ61164 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CtcfQ61164 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CtcfQ61164 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CtcfQ61164 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CtcfQ61164 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CtcfQ61164 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.78■□□□□ 0.6
CtcfQ61164 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC18.78■□□□□ 0.6
CtcfQ61164 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CtcfQ61164 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CtcfQ61164 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CtcfQ61164 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CtcfQ61164 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.77■□□□□ 0.6
CtcfQ61164 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CtcfQ61164 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CtcfQ61164 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
CtcfQ61164 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CtcfQ61164 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.77■□□□□ 0.6
CtcfQ61164 Gm42545-201ENSMUST00000202755 922 ntBASIC18.77■□□□□ 0.6
CtcfQ61164 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CtcfQ61164 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CtcfQ61164 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CtcfQ61164 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CtcfQ61164 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CtcfQ61164 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
CtcfQ61164 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.77■□□□□ 0.59
CtcfQ61164 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CtcfQ61164 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CtcfQ61164 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CtcfQ61164 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CtcfQ61164 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC18.76■□□□□ 0.59
CtcfQ61164 Gm6576-201ENSMUST00000169678 883 ntBASIC18.76■□□□□ 0.59
CtcfQ61164 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CtcfQ61164 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CtcfQ61164 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.76■□□□□ 0.59
CtcfQ61164 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CtcfQ61164 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CtcfQ61164 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CtcfQ61164 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CtcfQ61164 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CtcfQ61164 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CtcfQ61164 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.75■□□□□ 0.59
CtcfQ61164 Gm15375-201ENSMUST00000119510 849 ntBASIC18.75■□□□□ 0.59
CtcfQ61164 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CtcfQ61164 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CtcfQ61164 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CtcfQ61164 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC18.75■□□□□ 0.59
CtcfQ61164 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CtcfQ61164 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
CtcfQ61164 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.75■□□□□ 0.59
CtcfQ61164 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.74■□□□□ 0.59
CtcfQ61164 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CtcfQ61164 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.74■□□□□ 0.59
CtcfQ61164 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CtcfQ61164 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.74■□□□□ 0.59
CtcfQ61164 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.74■□□□□ 0.59
CtcfQ61164 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CtcfQ61164 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms