Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col27a1Q5QNQ9 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col27a1Q5QNQ9 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Gm45683-201ENSMUST00000210825 1247 ntBASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Gm5784-201ENSMUST00000179344 2478 ntBASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col27a1Q5QNQ9 Gm8097-201ENSMUST00000117903 829 ntBASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Gm6089-201ENSMUST00000197666 938 ntBASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Ndufaf2-202ENSMUST00000223734 556 ntBASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Gm4459-201ENSMUST00000118750 468 ntBASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col27a1Q5QNQ9 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Gm27321-201ENSMUST00000185021 205 ntBASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC16.46■□□□□ 0.23
Col27a1Q5QNQ9 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC16.46■□□□□ 0.22
Col27a1Q5QNQ9 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Col27a1Q5QNQ9 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 AC159114.1-201ENSMUST00000220349 266 ntBASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Gm26308-201ENSMUST00000157768 69 ntBASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Col27a1Q5QNQ9 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col27a1Q5QNQ9 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Col27a1Q5QNQ9 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms