Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Gm43272-201ENSMUST00000200599 1584 ntBASIC17.73■□□□□ 0.43
Rnf40Q3U319 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf40Q3U319 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Gm37812-201ENSMUST00000195216 2475 ntBASIC17.72■□□□□ 0.43
Rnf40Q3U319 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf40Q3U319 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Rnf40Q3U319 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Crls1-204ENSMUST00000124836 1267 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf40Q3U319 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Rnf40Q3U319 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Rnf40Q3U319 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC17.7■□□□□ 0.42
Rnf40Q3U319 Gm29791-202ENSMUST00000207888 369 ntBASIC17.7■□□□□ 0.42
Rnf40Q3U319 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
Rnf40Q3U319 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf40Q3U319 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.69■□□□□ 0.42
Rnf40Q3U319 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.69■□□□□ 0.42
Rnf40Q3U319 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rnf40Q3U319 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms