Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Traf1P39428 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Traf1P39428 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Traf1P39428 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Traf1P39428 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC19.72■□□□□ 0.75
Traf1P39428 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Traf1P39428 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC19.72■□□□□ 0.75
Traf1P39428 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC19.72■□□□□ 0.75
Traf1P39428 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Traf1P39428 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Traf1P39428 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 Gm5587-201ENSMUST00000206270 674 ntBASIC19.71■□□□□ 0.75
Traf1P39428 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC19.71■□□□□ 0.75
Traf1P39428 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Traf1P39428 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Traf1P39428 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.74
Traf1P39428 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.7■□□□□ 0.74
Traf1P39428 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Traf1P39428 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Traf1P39428 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.7■□□□□ 0.74
Traf1P39428 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Traf1P39428 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Traf1P39428 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC19.7■□□□□ 0.74
Traf1P39428 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Traf1P39428 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Traf1P39428 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Traf1P39428 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Traf1P39428 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Gm11355-201ENSMUST00000121120 306 ntBASIC19.69■□□□□ 0.74
Traf1P39428 Gm18958-201ENSMUST00000174258 762 ntBASIC19.69■□□□□ 0.74
Traf1P39428 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC19.69■□□□□ 0.74
Traf1P39428 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.69■□□□□ 0.74
Traf1P39428 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Traf1P39428 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.68■□□□□ 0.74
Traf1P39428 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Traf1P39428 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Traf1P39428 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Traf1P39428 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Traf1P39428 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Traf1P39428 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Traf1P39428 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Traf1P39428 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Traf1P39428 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Traf1P39428 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Traf1P39428 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC19.67■□□□□ 0.74
Traf1P39428 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Traf1P39428 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Traf1P39428 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
Traf1P39428 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.67■□□□□ 0.74
Traf1P39428 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Gm8258-201ENSMUST00000055593 1449 ntBASIC19.67■□□□□ 0.74
Traf1P39428 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Traf1P39428 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Traf1P39428 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Traf1P39428 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms