Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
RaraP11416 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RaraP11416 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RaraP11416 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
RaraP11416 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RaraP11416 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RaraP11416 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RaraP11416 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
RaraP11416 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.45■□□□□ 0.54
RaraP11416 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
RaraP11416 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
RaraP11416 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
RaraP11416 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
RaraP11416 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RaraP11416 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
RaraP11416 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
RaraP11416 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.44■□□□□ 0.54
RaraP11416 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC18.44■□□□□ 0.54
RaraP11416 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.44■□□□□ 0.54
RaraP11416 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.44■□□□□ 0.54
RaraP11416 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
RaraP11416 Gm18666-201ENSMUST00000190039 958 ntBASIC18.44■□□□□ 0.54
RaraP11416 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RaraP11416 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.43■□□□□ 0.54
RaraP11416 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
RaraP11416 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
RaraP11416 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RaraP11416 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.42■□□□□ 0.54
RaraP11416 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Trmt13-210ENSMUST00000198454 880 ntBASIC18.42■□□□□ 0.54
RaraP11416 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.42■□□□□ 0.54
RaraP11416 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RaraP11416 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
RaraP11416 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RaraP11416 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RaraP11416 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.41■□□□□ 0.54
RaraP11416 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.41■□□□□ 0.54
RaraP11416 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RaraP11416 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
RaraP11416 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RaraP11416 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RaraP11416 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RaraP11416 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms