Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col3a1P08121 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col3a1P08121 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col3a1P08121 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
Col3a1P08121 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.35■□□□□ 0.85
Col3a1P08121 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.35■□□□□ 0.85
Col3a1P08121 Zfp264-201ENSMUST00000208656 1563 ntBASIC20.35■□□□□ 0.85
Col3a1P08121 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC20.35■□□□□ 0.85
Col3a1P08121 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col3a1P08121 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col3a1P08121 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Col3a1P08121 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.34■□□□□ 0.85
Col3a1P08121 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC20.34■□□□□ 0.85
Col3a1P08121 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col3a1P08121 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
Col3a1P08121 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Col3a1P08121 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC20.34■□□□□ 0.85
Col3a1P08121 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col3a1P08121 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col3a1P08121 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Col3a1P08121 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col3a1P08121 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col3a1P08121 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col3a1P08121 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Col3a1P08121 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Col3a1P08121 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col3a1P08121 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col3a1P08121 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Col3a1P08121 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col3a1P08121 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC20.33■□□□□ 0.85
Col3a1P08121 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col3a1P08121 Spr-ps1-201ENSMUST00000089584 605 ntBASIC20.33■□□□□ 0.85
Col3a1P08121 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Col3a1P08121 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col3a1P08121 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.33■□□□□ 0.84
Col3a1P08121 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC20.33■□□□□ 0.84
Col3a1P08121 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col3a1P08121 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
Col3a1P08121 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col3a1P08121 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col3a1P08121 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Col3a1P08121 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC20.32■□□□□ 0.84
Col3a1P08121 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col3a1P08121 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Col3a1P08121 Gm44771-201ENSMUST00000206975 626 ntBASIC20.32■□□□□ 0.84
Col3a1P08121 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Col3a1P08121 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col3a1P08121 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col3a1P08121 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Col3a1P08121 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col3a1P08121 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col3a1P08121 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col3a1P08121 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Col3a1P08121 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.32■□□□□ 0.84
Col3a1P08121 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Col3a1P08121 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC20.31■□□□□ 0.84
Col3a1P08121 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
Col3a1P08121 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC20.31■□□□□ 0.84
Col3a1P08121 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.31■□□□□ 0.84
Col3a1P08121 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC20.31■□□□□ 0.84
Col3a1P08121 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col3a1P08121 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
Col3a1P08121 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC20.3■□□□□ 0.84
Col3a1P08121 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
Col3a1P08121 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC20.3■□□□□ 0.84
Col3a1P08121 AC153889.1-201ENSMUST00000219257 330 ntBASIC20.3■□□□□ 0.84
Col3a1P08121 AC124569.2-201ENSMUST00000225998 818 ntBASIC20.3■□□□□ 0.84
Col3a1P08121 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Col3a1P08121 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Col3a1P08121 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC20.3■□□□□ 0.84
Col3a1P08121 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col3a1P08121 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col3a1P08121 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.3■□□□□ 0.84
Col3a1P08121 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col3a1P08121 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC20.3■□□□□ 0.84
Col3a1P08121 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC20.3■□□□□ 0.84
Col3a1P08121 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col3a1P08121 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC20.3■□□□□ 0.84
Col3a1P08121 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC20.3■□□□□ 0.84
Col3a1P08121 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC20.3■□□□□ 0.84
Col3a1P08121 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col3a1P08121 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col3a1P08121 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col3a1P08121 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col3a1P08121 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col3a1P08121 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms