Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Pcdhgb8A0A140LI48 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 AC121961.1-201ENSMUST00000218594 1779 ntBASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Gm9867-201ENSMUST00000192212 2647 ntBASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Pcdhgb8A0A140LI48 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 AC107452.1-201ENSMUST00000227963 481 ntBASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Nrn1-203ENSMUST00000223611 1443 ntBASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC15.41■□□□□ 0.06
Pcdhgb8A0A140LI48 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Gm15378-201ENSMUST00000121894 207 ntBASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Pcdhgb8A0A140LI48 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 H2-K2-201ENSMUST00000174250 1049 ntBASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 AC163280.1-201ENSMUST00000228194 1100 ntBASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Tgds-204ENSMUST00000228543 1594 ntBASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Pcdhgb8A0A140LI48 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms