Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm24546-201ENSMUST00000158652 102 ntBASIC2.2□□□□□ -2.06
Scn4aQ9ER60 Gm25163-201ENSMUST00000158905 104 ntBASIC2.2□□□□□ -2.06
Scn4aQ9ER60 Gtpbp4-ps2-201ENSMUST00000184058 256 ntBASIC2.2□□□□□ -2.06
Scn4aQ9ER60 CT025689.4-201ENSMUST00000225926 601 ntBASIC2.2□□□□□ -2.06
Scn4aQ9ER60 Stfa3-201ENSMUST00000068182 412 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
Scn4aQ9ER60 Skint11-201ENSMUST00000079915 820 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
Scn4aQ9ER60 Gm3867-202ENSMUST00000181639 2007 ntTSL 2 BASIC2.2□□□□□ -2.06
Scn4aQ9ER60 Gm26147-201ENSMUST00000104479 114 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm12697-201ENSMUST00000118008 667 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm23000-201ENSMUST00000157083 139 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm22038-201ENSMUST00000157277 242 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm24716-201ENSMUST00000157524 104 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm25220-201ENSMUST00000157546 95 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Vmn2r-ps33-201ENSMUST00000175691 904 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Esp16-201ENSMUST00000178037 1243 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm37291-201ENSMUST00000195637 533 ntTSL 5 BASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Olfr848-ps1-201ENSMUST00000212241 930 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm2628-201ENSMUST00000218019 426 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 AC161758.2-201ENSMUST00000228513 218 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 1700010L04Rik-201ENSMUST00000032872 330 ntTSL 5 BASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm23247-201ENSMUST00000083373 107 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Olfr1208-203ENSMUST00000214297 2844 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
Scn4aQ9ER60 BE692007-203ENSMUST00000189306 362 ntTSL 3 BASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm42439-201ENSMUST00000195931 486 ntTSL 3 BASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm44282-201ENSMUST00000203199 190 ntBASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Cysltr1-201ENSMUST00000064892 1059 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm10717-202ENSMUST00000099042 669 ntAPPRIS P5 TSL 5 BASIC2.19□□□□□ -2.06
Scn4aQ9ER60 Gm22494-201ENSMUST00000104495 128 ntBASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Gm11556-201ENSMUST00000120751 288 ntBASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Gm11438-201ENSMUST00000121582 189 ntBASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Gm22083-201ENSMUST00000157586 102 ntBASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Gm23559-201ENSMUST00000157824 103 ntBASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Gm24901-201ENSMUST00000158125 110 ntBASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Gm24897-201ENSMUST00000179033 107 ntBASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Gm28595-201ENSMUST00000186223 437 ntTSL 5 BASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Smr3a-202ENSMUST00000189633 467 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Topbp1-ps2-201ENSMUST00000191289 189 ntBASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Gm18703-201ENSMUST00000215318 333 ntBASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Olfr823-201ENSMUST00000081469 948 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Olfr606-203ENSMUST00000217250 2313 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
Scn4aQ9ER60 Gm23991-201ENSMUST00000117033 93 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm13368-201ENSMUST00000122443 430 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm2830-201ENSMUST00000140330 385 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm26275-201ENSMUST00000157101 268 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm26049-201ENSMUST00000157313 108 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Vmn1r-ps150-201ENSMUST00000176659 736 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Rpl23a-ps9-201ENSMUST00000188369 463 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm28647-201ENSMUST00000188416 197 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Rpl23a-ps11-201ENSMUST00000191583 463 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm32250-201ENSMUST00000191885 322 ntTSL 3 BASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm39038-201ENSMUST00000206774 355 ntTSL 3 BASIC2.17□□□□□ -2.06
Scn4aQ9ER60 AC112274.2-201ENSMUST00000218436 170 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Mir137-201ENSMUST00000083635 73 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Olfr307-203ENSMUST00000217494 4515 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
Scn4aQ9ER60 1700006A11Rik-201ENSMUST00000029598 2161 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm18751-201ENSMUST00000185777 2013 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm14841-201ENSMUST00000121067 758 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm11849-201ENSMUST00000121293 261 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm14766-201ENSMUST00000121689 367 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm24056-201ENSMUST00000158617 146 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Scgb2b23-ps-202ENSMUST00000167012 516 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Hmga1b-202ENSMUST00000178955 120 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm11395-201ENSMUST00000181011 499 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm44693-201ENSMUST00000208141 460 ntTSL 3 BASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm19032-201ENSMUST00000208584 592 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm25796-201ENSMUST00000082645 163 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Mir221-201ENSMUST00000083488 95 ntBASIC2.17□□□□□ -2.06
Scn4aQ9ER60 Gm36989-201ENSMUST00000193225 2160 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Gm15084-201ENSMUST00000178585 1502 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Mdga2-203ENSMUST00000113942 423 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Ssxb6-201ENSMUST00000138642 518 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Gm23328-201ENSMUST00000157418 132 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Gm23033-201ENSMUST00000157996 134 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Vmn1r-ps86-201ENSMUST00000174052 547 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Gm20915-201ENSMUST00000191575 663 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Olfr184-ps1-201ENSMUST00000205922 516 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 4930402F11Rik-202ENSMUST00000207781 1178 ntTSL 5 BASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Gm7065-201ENSMUST00000222150 474 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Gm19118-201ENSMUST00000222554 98 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Gm22061-201ENSMUST00000082557 107 ntBASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Vmn1r87-202ENSMUST00000211249 1835 ntAPPRIS P1 TSL 3 BASIC2.16□□□□□ -2.06
Scn4aQ9ER60 Olfr1442-203ENSMUST00000208494 3593 ntAPPRIS P1 TSL 3 BASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm22270-201ENSMUST00000104034 132 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm13720-201ENSMUST00000120741 196 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm14362-201ENSMUST00000121679 273 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm15077-201ENSMUST00000122344 362 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm15254-201ENSMUST00000149567 273 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm23956-201ENSMUST00000157211 119 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm26029-201ENSMUST00000158659 132 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm6788-201ENSMUST00000166459 270 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm17542-201ENSMUST00000169859 99 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm24656-201ENSMUST00000177548 132 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Gm44324-201ENSMUST00000198517 135 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Olfr1470-ps1-201ENSMUST00000208620 949 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 AC133598.3-201ENSMUST00000224322 568 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Olfr394-201ENSMUST00000071478 933 ntAPPRIS P1 BASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Mir423-201ENSMUST00000083584 109 ntBASIC2.15□□□□□ -2.06
Scn4aQ9ER60 Zfp932-207ENSMUST00000187241 1581 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
Scn4aQ9ER60 AC117226.1-201ENSMUST00000221635 3737 ntBASIC2.15□□□□□ -2.07
Scn4aQ9ER60 Gm19428-201ENSMUST00000220512 1995 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 76,532 protein–RNA pairs in 85.4 ms