Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm22131-201ENSMUST00000178415 94 ntBASIC0.17□□□□□ -2.38
Ccdc88bQ4QRL3 Mir6364-201ENSMUST00000183396 86 ntBASIC0.17□□□□□ -2.38
Ccdc88bQ4QRL3 Gm45316-201ENSMUST00000210128 162 ntBASIC0.17□□□□□ -2.38
Ccdc88bQ4QRL3 Gm18252-203ENSMUST00000215855 757 ntBASIC0.17□□□□□ -2.38
Ccdc88bQ4QRL3 Gm15088-201ENSMUST00000117973 1508 ntBASIC0.17□□□□□ -2.38
Ccdc88bQ4QRL3 Gm15098-201ENSMUST00000119036 1508 ntBASIC0.17□□□□□ -2.38
Ccdc88bQ4QRL3 Cylc1-201ENSMUST00000101282 1923 ntAPPRIS P2 TSL 1 (best) BASIC0.17□□□□□ -2.38
Ccdc88bQ4QRL3 Gm11240-201ENSMUST00000142047 751 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
Ccdc88bQ4QRL3 Gm43142-201ENSMUST00000198670 361 ntBASIC0.16□□□□□ -2.38
Ccdc88bQ4QRL3 Ppp4r3c-ps-201ENSMUST00000151416 2445 ntBASIC0.16□□□□□ -2.38
Ccdc88bQ4QRL3 Gm26102-201ENSMUST00000157251 284 ntBASIC0.16□□□□□ -2.38
Ccdc88bQ4QRL3 Gm24837-201ENSMUST00000158683 81 ntBASIC0.16□□□□□ -2.38
Ccdc88bQ4QRL3 Clec4a4-201ENSMUST00000079379 776 ntAPPRIS P1 TSL 1 (best) BASIC0.16□□□□□ -2.38
Ccdc88bQ4QRL3 Skint11-201ENSMUST00000079915 820 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
Ccdc88bQ4QRL3 Snord96a-201ENSMUST00000082791 81 ntBASIC0.16□□□□□ -2.38
Ccdc88bQ4QRL3 Gm22293-201ENSMUST00000083314 109 ntBASIC0.16□□□□□ -2.38
Ccdc88bQ4QRL3 Gm14403-201ENSMUST00000108940 774 ntTSL 5 BASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 Gm14791-201ENSMUST00000119061 1166 ntBASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 Gm6591-201ENSMUST00000121063 434 ntBASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 n-R5s157-201ENSMUST00000122543 121 ntBASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 Gm25423-201ENSMUST00000157609 107 ntBASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 Gm10074-201ENSMUST00000174543 249 ntBASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 Npn2-202ENSMUST00000189275 235 ntBASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 Olfr165-203ENSMUST00000206410 1040 ntAPPRIS P2 BASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 Gm44644-201ENSMUST00000207994 642 ntTSL 3 BASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 AC113441.1-201ENSMUST00000223464 134 ntBASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 Olfr165-201ENSMUST00000052516 1040 ntAPPRIS ALT1 BASIC0.15□□□□□ -2.39
Ccdc88bQ4QRL3 Gm24047-201ENSMUST00000102405 104 ntBASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 BC117090-201ENSMUST00000114850 387 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Gm13678-201ENSMUST00000118926 340 ntBASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Gm15497-201ENSMUST00000119137 551 ntBASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Gm13184-201ENSMUST00000149932 626 ntTSL 3 BASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Gm26484-201ENSMUST00000158018 106 ntBASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Gm23208-201ENSMUST00000158666 127 ntBASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Gm23933-201ENSMUST00000178405 79 ntBASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Mir7675-201ENSMUST00000184262 58 ntBASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Olfr534-ps1-201ENSMUST00000211776 870 ntBASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Olfr196-201ENSMUST00000077027 930 ntAPPRIS P1 BASIC0.14□□□□□ -2.39
Ccdc88bQ4QRL3 Gm1553-201ENSMUST00000177934 658 ntAPPRIS P1 TSL 1 (best) BASIC0.13□□□□□ -2.39
Ccdc88bQ4QRL3 Gm42958-201ENSMUST00000197595 318 ntBASIC0.13□□□□□ -2.39
Ccdc88bQ4QRL3 Gm45146-201ENSMUST00000207108 221 ntBASIC0.13□□□□□ -2.39
Ccdc88bQ4QRL3 Gm45374-201ENSMUST00000211388 136 ntBASIC0.13□□□□□ -2.39
Ccdc88bQ4QRL3 AC155314.1-201ENSMUST00000227624 508 ntBASIC0.13□□□□□ -2.39
Ccdc88bQ4QRL3 Olfr1489-201ENSMUST00000053113 1111 ntAPPRIS P1 BASIC0.13□□□□□ -2.39
Ccdc88bQ4QRL3 Gm10092-201ENSMUST00000077110 180 ntBASIC0.13□□□□□ -2.39
Ccdc88bQ4QRL3 Gm5583-201ENSMUST00000174328 1519 ntBASIC0.12□□□□□ -2.39
Ccdc88bQ4QRL3 Mir695-201ENSMUST00000102261 109 ntBASIC0.12□□□□□ -2.39
Ccdc88bQ4QRL3 Gm15230-201ENSMUST00000153701 510 ntTSL 2 BASIC0.12□□□□□ -2.39
Ccdc88bQ4QRL3 Gm37771-201ENSMUST00000193121 265 ntBASIC0.12□□□□□ -2.39
Ccdc88bQ4QRL3 AC125531.1-201ENSMUST00000219849 221 ntBASIC0.12□□□□□ -2.39
Ccdc88bQ4QRL3 Gm14932-201ENSMUST00000117112 453 ntBASIC0.11□□□□□ -2.39
Ccdc88bQ4QRL3 Gm16431-201ENSMUST00000117454 431 ntBASIC0.11□□□□□ -2.39
Ccdc88bQ4QRL3 Gm11904-201ENSMUST00000120562 248 ntBASIC0.11□□□□□ -2.39
Ccdc88bQ4QRL3 Gm14577-201ENSMUST00000121134 256 ntBASIC0.11□□□□□ -2.39
Ccdc88bQ4QRL3 Gm23312-201ENSMUST00000158774 102 ntBASIC0.11□□□□□ -2.39
Ccdc88bQ4QRL3 AC167140.1-201ENSMUST00000224710 403 ntBASIC0.11□□□□□ -2.39
Ccdc88bQ4QRL3 mt-Tm-201ENSMUST00000082395 69 ntBASIC0.11□□□□□ -2.39
Ccdc88bQ4QRL3 Mir574-201ENSMUST00000103854 78 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Gm14918-201ENSMUST00000118153 268 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Gm26101-201ENSMUST00000157246 105 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Mir3057-201ENSMUST00000175040 91 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Vmn1r227-202ENSMUST00000179914 1026 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Mir6341-201ENSMUST00000183490 121 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Obox4-ps25-201ENSMUST00000199090 210 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Gm44459-201ENSMUST00000203926 160 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 AC114010.1-201ENSMUST00000222060 379 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 CT025602.1-201ENSMUST00000227281 382 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 mt-Nd5-201ENSMUST00000082418 1824 ntAPPRIS P1 BASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Gm23704-201ENSMUST00000158844 340 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Selenok-ps4-201ENSMUST00000178835 277 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Obox4-ps3-201ENSMUST00000183474 520 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Ptp4a1-206ENSMUST00000202889 135 ntTSL 2 BASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 AC133076.1-201ENSMUST00000228074 484 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Mir208a-201ENSMUST00000083498 83 ntBASIC0.1□□□□□ -2.39
Ccdc88bQ4QRL3 Traj11-201ENSMUST00000103730 59 ntAPPRIS P1 BASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Mir467h-201ENSMUST00000116759 121 ntBASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Gm26303-201ENSMUST00000116845 119 ntBASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Gm15214-201ENSMUST00000122155 470 ntBASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Gm22087-201ENSMUST00000158339 88 ntBASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Gm22075-201ENSMUST00000158599 192 ntBASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Mir6365-201ENSMUST00000183990 101 ntBASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Gm29575-201ENSMUST00000190597 315 ntBASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Gm43301-201ENSMUST00000198918 778 ntTSL 1 (best) BASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Gm45439-201ENSMUST00000211723 359 ntBASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Tas2r113-201ENSMUST00000079035 930 ntAPPRIS P1 BASIC0.09□□□□□ -2.4
Ccdc88bQ4QRL3 Gm14568-201ENSMUST00000119321 294 ntBASIC0.08□□□□□ -2.4
Ccdc88bQ4QRL3 n-R5s73-201ENSMUST00000122508 107 ntBASIC0.08□□□□□ -2.4
Ccdc88bQ4QRL3 Vmn1r-ps65-201ENSMUST00000174235 951 ntBASIC0.08□□□□□ -2.4
Ccdc88bQ4QRL3 CT485612.2-201ENSMUST00000223014 151 ntBASIC0.08□□□□□ -2.4
Ccdc88bQ4QRL3 AC126939.3-201ENSMUST00000226061 166 ntBASIC0.08□□□□□ -2.4
Ccdc88bQ4QRL3 Gm25697-201ENSMUST00000082902 98 ntBASIC0.08□□□□□ -2.4
Ccdc88bQ4QRL3 Gm25578-201ENSMUST00000083406 104 ntBASIC0.08□□□□□ -2.4
Ccdc88bQ4QRL3 Gm15312-201ENSMUST00000118827 271 ntBASIC0.07□□□□□ -2.4
Ccdc88bQ4QRL3 Gm24808-201ENSMUST00000157993 118 ntBASIC0.07□□□□□ -2.4
Ccdc88bQ4QRL3 Gm25711-201ENSMUST00000158633 128 ntBASIC0.07□□□□□ -2.4
Ccdc88bQ4QRL3 Gm24333-201ENSMUST00000175101 84 ntBASIC0.07□□□□□ -2.4
Ccdc88bQ4QRL3 Gm38208-201ENSMUST00000192476 114 ntBASIC0.07□□□□□ -2.4
Ccdc88bQ4QRL3 AC124542.1-201ENSMUST00000205588 908 ntBASIC0.07□□□□□ -2.4
Ccdc88bQ4QRL3 AC154424.1-201ENSMUST00000225883 799 ntBASIC0.07□□□□□ -2.4
Ccdc88bQ4QRL3 Gm25589-201ENSMUST00000082502 166 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 76,532 protein–RNA pairs in 86.1 ms