Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm28825-201ENSMUST00000186233 238 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm28976-201ENSMUST00000188070 144 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm28143-201ENSMUST00000191082 109 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm43730-201ENSMUST00000199863 372 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 CT010511.1-201ENSMUST00000224570 315 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Gm23514-201ENSMUST00000082827 130 ntBASIC4.52□□□□□ -1.69
Rnf40Q3U319 Olfr1030-201ENSMUST00000056849 4522 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
Rnf40Q3U319 Abi3bp-204ENSMUST00000171000 3877 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
Rnf40Q3U319 Btbd35f3-201ENSMUST00000140300 1943 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
Rnf40Q3U319 Cd200r3-209ENSMUST00000166731 3876 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
Rnf40Q3U319 Dnah12-201ENSMUST00000022433 12009 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
Rnf40Q3U319 AC124562.2-201ENSMUST00000223888 2313 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Zfp616-205ENSMUST00000178159 2964 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
Rnf40Q3U319 Znf41-ps-201ENSMUST00000122051 2413 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm12351-201ENSMUST00000118727 292 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm24774-201ENSMUST00000157384 134 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm24959-201ENSMUST00000157924 146 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm20428-201ENSMUST00000174365 283 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm25678-201ENSMUST00000174984 73 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm22510-201ENSMUST00000179304 79 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm26336-201ENSMUST00000179449 79 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm26390-201ENSMUST00000179628 79 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm18665-201ENSMUST00000189783 270 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Gm45660-201ENSMUST00000210267 151 ntBASIC4.51□□□□□ -1.69
Rnf40Q3U319 Olfr1316-202ENSMUST00000213696 4184 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
Rnf40Q3U319 Rbbp6-203ENSMUST00000098062 6345 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
Rnf40Q3U319 Olfr406-203ENSMUST00000217016 2651 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Zfp990-201ENSMUST00000105741 3044 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Olfr1249-202ENSMUST00000216124 3047 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Vmn1r89-203ENSMUST00000227176 4189 ntAPPRIS P2 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Vmn2r70-201ENSMUST00000168230 2565 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm3443-201ENSMUST00000112772 285 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm15268-201ENSMUST00000118845 352 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm22957-201ENSMUST00000122511 123 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm15767-202ENSMUST00000153786 544 ntTSL 3 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Mir6370-201ENSMUST00000183510 120 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm28650-201ENSMUST00000188413 411 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 4930535G08Rik-201ENSMUST00000192017 425 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm37281-201ENSMUST00000192412 439 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 CT030159.4-201ENSMUST00000221966 395 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 AC135292.1-201ENSMUST00000227665 204 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm22686-201ENSMUST00000082847 100 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm25187-201ENSMUST00000083906 133 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 Defb25-201ENSMUST00000099203 293 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Btbd35f10-201ENSMUST00000178621 1952 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Mmrn1-201ENSMUST00000129603 4477 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Olfr1205-202ENSMUST00000215929 6149 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Obscn-201ENSMUST00000020732 23483 ntTSL 5 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm42528-201ENSMUST00000200697 3418 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 Gm14416-201ENSMUST00000118630 2308 ntBASIC4.5□□□□□ -1.69
Rnf40Q3U319 Jmjd1c-206ENSMUST00000173689 8609 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Olfr1177-ps-202ENSMUST00000216713 2821 ntAPPRIS P5 TSL 3 BASIC4.5□□□□□ -1.69
Rnf40Q3U319 Olfr1461-202ENSMUST00000207113 3481 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
Rnf40Q3U319 Vmn2r38-201ENSMUST00000108554 3663 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
Rnf40Q3U319 Olfr218-203ENSMUST00000216603 3623 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm42635-201ENSMUST00000200266 2571 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Olfr1208-202ENSMUST00000214121 2823 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm37625-201ENSMUST00000194969 4872 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Scml2-203ENSMUST00000077375 3550 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm32693-201ENSMUST00000196538 2402 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm24067-201ENSMUST00000104514 85 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm16005-201ENSMUST00000120515 269 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm23535-201ENSMUST00000157542 106 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm10292-201ENSMUST00000183142 581 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm44402-201ENSMUST00000203677 238 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm20368-201ENSMUST00000220716 301 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm5548-201ENSMUST00000055878 397 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 AC152162.1-201ENSMUST00000225910 2917 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 2210408I21Rik-201ENSMUST00000168779 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm44525-201ENSMUST00000183129 2634 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Gm43877-201ENSMUST00000205029 2238 ntBASIC4.49□□□□□ -1.69
Rnf40Q3U319 Klhl13-205ENSMUST00000115319 3349 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
Rnf40Q3U319 Olfr1354-203ENSMUST00000217073 3792 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
Rnf40Q3U319 Olfr355-202ENSMUST00000213574 3610 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm38152-201ENSMUST00000195389 3566 ntBASIC4.48□□□□□ -1.69
Rnf40Q3U319 Mgat4c-212ENSMUST00000179929 4272 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Igkv4-57-201ENSMUST00000103357 352 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm24578-201ENSMUST00000103970 129 ntBASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm12466-201ENSMUST00000121199 620 ntBASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm12974-201ENSMUST00000129875 333 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm16265-201ENSMUST00000134558 108 ntBASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm43439-201ENSMUST00000138710 322 ntTSL 3 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm22483-201ENSMUST00000157986 274 ntBASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm26828-201ENSMUST00000180640 172 ntBASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm30097-201ENSMUST00000193581 447 ntTSL 5 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm43236-201ENSMUST00000197414 313 ntTSL 5 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm44976-201ENSMUST00000205543 261 ntBASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm18000-201ENSMUST00000212153 800 ntBASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm23875-201ENSMUST00000083711 318 ntBASIC4.48□□□□□ -1.69
Rnf40Q3U319 Smim4-203ENSMUST00000090205 426 ntTSL 2 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Olfr706-202ENSMUST00000213918 4828 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Vmn1r66-204ENSMUST00000228086 3013 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Olfr270-204ENSMUST00000215127 3145 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
Rnf40Q3U319 Gm37211-201ENSMUST00000193392 3433 ntBASIC4.47□□□□□ -1.69
Rnf40Q3U319 A230057D06Rik-202ENSMUST00000207061 3717 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Rnf40Q3U319 2310001H17Rik-203ENSMUST00000181517 3981 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Rnf40Q3U319 Gm23274-201ENSMUST00000104056 130 ntBASIC4.47□□□□□ -1.69
Rnf40Q3U319 Gm14688-201ENSMUST00000119169 303 ntBASIC4.47□□□□□ -1.69
Rnf40Q3U319 Mir7056-201ENSMUST00000183776 59 ntBASIC4.47□□□□□ -1.69
Rnf40Q3U319 Mir6938-201ENSMUST00000184173 63 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 76,532 protein–RNA pairs in 82.6 ms